Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1389 ATGTCTAACTCTAGAATCTCAAATACTTCACCCAAAGGATACAGAAACCAAACCCAAATGAACACATTTTTTCTTCAACATAACACATCATCAAATCCTAGTGAAAGAAGAGGCAGAAGAAAGCAACAAGAACCAGGTAGGTTTGTTGGTGTAAGGAAACGTCCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTGAAGAAGCAGCTCTTGCTTATGATAGAGCTGCATTCTCCATCAAAGGTAGCCAAGCCAGAACAAACTTCATTTACTCTCACAATAATAGCACCACTTTTCACAATCTTCTTACTCCTATGCAAGTTCAATCTCTTTTACCAACTCCACAATTCATCACAAACACTCAAAACACTTCCCATTTCAGCAATGCAATGTGTGATGAAACTGAAACTGAAACTGAAACTGCATATGCATATGCTTCACCTAAGGATGATAACTTTTTCTTCTCCAATGATTCTAATAACTCTGGCTATTTGGAATGCATAGTTCCTGATAGTTGTTTAAGACCTGTTTCAAGTGACCAAAAGGGTAGTAGCTATATTAACACAAACACCATGCAGGGTCAGTCATATTTTGACAACAATGCATTTTCTCAAGAAGCCTTAAACATGCAAACAACAATGCATGTTTCTTCTAACTTTGGAGGTTTTTCTTACCAAAATGAACCTAGTAAAGGATTCTTGGATAACCAACAATCATGGGATTGTAATTCTAGTGAACTTTCAGCTATATTTAATAAACCATTAAGGGTTGAAGATGGGTACTGCATGGGTGCATTGTGTCCTATCAGTGAAAGTCCAATCTATGAGACTGTTTCTTCATGCTCTCCATCATTTCCTCCTCCCTTTGGTGATATTGACTTGGGATACTCACCATCACCTTTCTAA 948 0.3776 MSNSRISNTSPKGYRNQTQMNTFFLQHNTSSNPSERRGRRKQQEPGRFVGVRKRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAAFSIKGSQARTNFIYSHNNSTTFHNLLTPMQVQSLLPTPQFITNTQNTSHFSNAMCDETETETETAYAYASPKDDNFFFSNDSNNSGYLECIVPDSCLRPVSSDQKGSSYINTNTMQGQSYFDNNAFSQEALNMQTTMHVSSNFGGFSYQNEPSKGFLDNQQSWDCNSSELSAIFNKPLRVEDGYCMGALCPISESPIYETVSSCSPSFPPPFGDIDLGYSPSPF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1389 315 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Lal5g1389 315 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Lal5g1389 315 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Lal5g1389 315 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Lal5g1389 315 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 311 - -
Lal5g1389 315 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Lal5g1389 315 MobiDBLite consensus disorder prediction 33 48 - -
Lal5g1389 315 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Lal5g1389 315 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 311 - -
Lal5g1389 315 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Lal5g1389 315 MobiDBLite consensus disorder prediction 27 48 - -
Lal5g1389 315 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1389 Lal-Chr5 16552485 16553432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1389 1 200 AP2-EREBP Transcription Factor Family AT5G18560 42.481 2.28e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal5g1389 AP2 8e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1389 5 16552485 16553432 Lal3g0344 3 2265848 2266792 LSH
Lal14g1948 14 18655267 18656250 Lal5g1389 5 16552485 16553432 PCT
Lal7g1430 7 19230066 19231106 Lal5g1389 5 16552485 16553432 PCT
Lal5g1389 5 16552485 16553432 Lal14g1948 14 18655267 18656250 PCT
Lal5g1389 5 16552485 16553432 Lal7g1430 7 19230066 19231106 PCT