Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1388 ATGGAGAGCTTTGCGAGGTCCATTGAAGGCTCTCGCTCTGATCCGTCGCTGGAATGGACCGGACACGGTGGTGAAACCGGTCTAGAAGGGTCTATGTGGCAATTGGGGTTAGGTGGTGGTGGCGGCGGTGAGGAATTTTATCCGTTACGCCCCAGTGAGGCTGATTGTATGTACTATTTGAGAACTGGCGTCTGTGGCTATGGTTCGCATTGTCGATTCAACCATCCTCCTGATCGTGGCACGGTTATTGGAGCTGCAAAGACCGGGGAGTTTCCGGAACGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAGGATCATGCAAATTTGGTCCATCCTGCAAGTACCACCATCCTAAGGAGGGAGGAGGCACTGCTAATCCTGTCTCGCTAAATTATTATGGATATCCATTGCGACCGGGTGAGAAAGAGTGCTCCTATTATGTCAAAACGGGACAATGCAAGTTTGGTTCAACTTGCAAATTCCATCATCCACAGCCCGCTGGTGTCCAAATTGCACCACCGCCAGTTCCCCAAGTTTCACATTTATCTATGCCTGTGCCTTCACCATTATACTCAACTGTACAGCCTCCATCTGATCCTTTATCACAACAGTTCAGTGTACTGGTTGCAAGGCCACCTCTGCTTCCTGGCTCATATGTCCAGAGCCCCTATGGCCCTGTGGTACTGTCCCCTGCCATGGTCCCTTATTCAGGTTGGGCTCCTTATCAGGCTACTGCGACAAGCCCTGTACTTCCCTCAAGTACTCCGTCTAATGTTGGTTCGGCACAGCTGTATGGGATAACCCAGCTAGATTCACCAGCAGGTGCCTATCCTGGACCTTACCTACCTTCTGGTTCCAAAATTGGTCCTTCAAGCAGTAGTCAGATGGAGCACTCACTTCCAGAAAGGCCCAATCAACCAGAATGTCAGCATTACTTGAAAACAGGGGAGTGCAAATTTGGTTCATCTTGTAGGTACCACCATCCACCGGACATGAATGCACCAAAAACGGCTGTGACCCTTAGTCCTGCAGGACTTCCTTCGCGCCCGGGAGCACCTCCTTGCACTCATTATGCACAACGGGGAGTTTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCTGTAGCATCACTGAGTTATAGTCTATCCGCTTCTTCTCTGGCTGACATGCCGGTTGCACTCTATCCCGTGGGTTCATCAATTGGTACACTTGCTTTGTCATCTCCATCATTAGAGTTGCGGCCTGAGTACATTGGTCAGAGTGTCTTCGTCAATGAGCACATTGGTCGTCAATGA 1305 0.5004 MESFARSIEGSRSDPSLEWTGHGGETGLEGSMWQLGLGGGGGGEEFYPLRPSEADCMYYLRTGVCGYGSHCRFNHPPDRGTVIGAAKTGEFPERVGQPVCQYYMRTGSCKFGPSCKYHHPKEGGGTANPVSLNYYGYPLRPGEKECSYYVKTGQCKFGSTCKFHHPQPAGVQIAPPPVPQVSHLSMPVPSPLYSTVQPPSDPLSQQFSVLVARPPLLPGSYVQSPYGPVVLSPAMVPYSGWAPYQATATSPVLPSSTPSNVGSAQLYGITQLDSPAGAYPGPYLPSGSKIGPSSSSQMEHSLPERPNQPECQHYLKTGECKFGSSCRYHHPPDMNAPKTAVTLSPAGLPSRPGAPPCTHYAQRGVCKFGPACKFDHPVASLSYSLSASSLADMPVALYPVGSSIGTLALSSPSLELRPEYIGQSVFVNEHIGRQ 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1388 434 SUPERFAMILY CCCH zinc finger 142 168 IPR036855 GO:0046872
Lal5g1388 434 Gene3D - 127 174 - -
Lal5g1388 434 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Lal5g1388 434 SMART c3hfinal6 50 77 IPR000571 GO:0046872
Lal5g1388 434 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Lal5g1388 434 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Lal5g1388 434 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Lal5g1388 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 308 332 IPR000571 GO:0046872
Lal5g1388 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 167 IPR000571 GO:0046872
Lal5g1388 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 53 77 IPR000571 GO:0046872
Lal5g1388 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Lal5g1388 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 377 IPR000571 GO:0046872
Lal5g1388 434 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Lal5g1388 434 SUPERFAMILY CCCH zinc finger 308 333 IPR036855 GO:0046872
Lal5g1388 434 MobiDBLite consensus disorder prediction 278 306 - -
Lal5g1388 434 MobiDBLite consensus disorder prediction 288 303 - -
Lal5g1388 434 Gene3D - 50 126 - -
Lal5g1388 434 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
Lal5g1388 434 SUPERFAMILY CCCH zinc finger 355 380 IPR036855 GO:0046872
Lal5g1388 434 MobiDBLite consensus disorder prediction 1 23 - -
Lal5g1388 434 PANTHER PROTEIN PHOSPHATASE RELATED 1 422 - -
Lal5g1388 434 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 422 - -
Lal5g1388 434 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Lal5g1388 434 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Lal5g1388 434 SUPERFAMILY CCCH zinc finger 53 78 IPR036855 GO:0046872
Lal5g1388 434 Gene3D - 294 381 - -
Lal5g1388 434 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Lal5g1388 434 SUPERFAMILY CCCH zinc finger 97 122 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1388 Lal-Chr5 16542064 16551452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1388 1 413 C2H2 Transcription Factor Family AT5G18550 59.906 1.02e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal5g1388 zf-CCCH 2.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1388 - - gmx:100789405 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1388 5 16542064 16551452 Lal3g0346 3 2269292 2279740 LSH
Lal5g1388 5 16542064 16551452 Lal11g0493 11 3851814 3862454 LSH
Lal14g1947 14 18650193 18654488 Lal5g1388 5 16542064 16551452 PCT
Lal7g1429 7 19224568 19228641 Lal5g1388 5 16542064 16551452 PCT
Lal19g1503 19 17401376 17406689 Lal5g1388 5 16542064 16551452 PCT
Lal5g1388 5 16542064 16551452 Lal14g1947 14 18650193 18654488 PCT
Lal5g1388 5 16542064 16551452 Lal7g1429 7 19224568 19228641 PCT
Lal5g1388 5 16542064 16551452 Lal19g1503 19 17401376 17406689 PCT