Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1387 ATGGTTACATTCAAGTATCACCAGTACCAGGTTGTCGGTAGGGCTCTCCCTACAGAATCAGACCAGCACCCTAAGATTTACCGCATGAAGCTTTGGGCCACCAACGAGGTTCGCGCTAAGTCTAAGTTCTGGTATTTTCTGAGGAAGCTCAAGAAGGTTAAGAAGAGCAATGGTCAGGTCCTTGCCATCAATGAGATTTTTGAGAAGAACCCAACGAAGATTAAGAACTATGGGATTTGGTTGAGGTATCAGAGTAGGACTGGTTACCACAACATGTACAAGGAGTACCGTGACACCACTCTAAATGGTGCAGTGGAGGCTATGTACAATGAGATGGCTTCACGTCATCGTGTCCGGTTCCCTTGCATTCAAATTATCAAGACTGCCACCATTGCGGCCAAGCTTTGCAAAAGAGAGAGCACAAAGCAATTCCATAACTCCAAAATCAAGTTCCCATTGGTGTACAAGAAGATTAGGCCACCAACAAGGAAGCTGAAGACCACATACAAGGCAAAGAAACCCAACTTGTTTATGTAA 537 0.4488 MVTFKYHQYQVVGRALPTESDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRFPCIQIIKTATIAAKLCKRESTKQFHNSKIKFPLVYKKIRPPTRKLKTTYKAKKPNLFM 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1387 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Lal5g1387 178 Gene3D - 72 147 - -
Lal5g1387 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Lal5g1387 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 IPR028877 -
Lal5g1387 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 IPR028877 -
Lal5g1387 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 - -
Lal5g1387 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 - -
Lal5g1387 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Lal5g1387 178 Gene3D - 1 71 - -
Lal5g1387 178 SUPERFAMILY RplX-like 71 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1387 Lal-Chr5 16534111 16535742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1387 1 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 88.764 1.60e-120 337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1387 5 16534111 16535742 Lal5g1387 5 16534111 16535742 ECH
Lal5g1387 5 16534111 16535742 Lal3g0347 3 2282134 2284110 LSH
Lal5g1387 5 16534111 16535742 Lal11g0494 11 3868590 3870433 LSH