Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1378 ATGGTGTTTGATATCGCTTACATGCTCTTCAACTTGGGATTAACATCATATATCATAGGAAACATGACTAACCTTGTAGTTCACTGGACCAGCCGCACCAGAAATTTTAGGGATACAATCAGAACAGCTTCTGAATTTGCTTCAAGAAATCAATTGCCCCATCAGATACAGAATCAAATGTTGTCTCACATATGTTTGAGGTTTAAAACAGAAGGATTGAAGCAGCAAGAAACATTGAATGATCTTCCGAAGACTATTCGTTCGAGCATTGCACAACATCTCTTTTTTCCTGTTGTGCAGAAGGTGTACCTCTTCCAAGGAGTCTCACATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCAGAGTATTTTCCACCAAAAGAAGATGTGATACTACAAAATGAGTCTTCTACAGACATGTACGTGCTGGTTTCAGGGACAGTGGATCTTATTCGCTACGTTGATGACCATGATCAGGTTCTTGGGACGGCACTTGCGGTTGATAGTTTTGGCGAGGTTGGAGTTTTATATAATATACCGCAGCCATTCACAGTTCGAACCACAGAGCTATCGCAAATTTTAAGACTCAACAGAACAACCTTAATGAATGTTTTACAAGCAAAACCAGGAGATGCACAAATTGTAATGCAGAACCTTTTCATGAAGTTAAAGGGACATGAAGAATTGGGCTTTGAATGTCCAGATACAGATCCTGGATTGGTTCTTCATGAAGAGCTTGATGGAGGCAACACAAGAAGAAGTTCTTCAAATGCATGTACAAATCATTCTCATGAACATTCACTAATGCAGGACGAGAGGAACAAAAACCTGAGATTCTGTGAGGACAACATGCTTAAGGTGACTAAAAATGAAGATGGTTTAATTACTAAACATAACATGATTCTTCGGGATAGGAAAAGAGATATTCATGCTGCTTCATGCAGAGAGAATCTTGACATGGTTGAAATTCTGCTTGAAAGAGATGCAAACAAAAAGATGCCTAATGCTGTGGGGTTGACACAAGAGGCTGTGGTAGAAAAGTTAAAAAACAAGAGCTTTTCTGGCAAAATAACGAGTTGCGAAAATGAGAAGATATCAAATGAACATAGAATAGACTTTGTAGAGCCAGAAATCCTTAACCATGACATGAATGACTCAACCAGAAACCGAAAACAAGATGGTATTAGACCTATCAACTTCCCAACAGAGAAAACATATTCAAACTCCTATTCAAGAAATTATAACTATCCACATGATAGAGAAGCAACAAGGTTCATCAAGAAGAGAGTAACAATTCACTTGCGATGCCGATGCAGAAGTACCTCAAAGGAACAGCATGGAAAGCTGATAATCTTACCTGATTCATTAGAAGAGTTGCTCAAAATTGCTGGTAAGCAGCAATACTAA 1410 0.3865 MVFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTIRTASEFASRNQLPHQIQNQMLSHICLRFKTEGLKQQETLNDLPKTIRSSIAQHLFFPVVQKVYLFQGVSHDFLFQLVSEMEAEYFPPKEDVILQNESSTDMYVLVSGTVDLIRYVDDHDQVLGTALAVDSFGEVGVLYNIPQPFTVRTTELSQILRLNRTTLMNVLQAKPGDAQIVMQNLFMKLKGHEELGFECPDTDPGLVLHEELDGGNTRRSSSNACTNHSHEHSLMQDERNKNLRFCEDNMLKVTKNEDGLITKHNMILRDRKRDIHAASCRENLDMVEILLERDANKKMPNAVGLTQEAVVEKLKNKSFSGKITSCENEKISNEHRIDFVEPEILNHDMNDSTRNRKQDGIRPINFPTEKTYSNSYSRNYNYPHDREATRFIKKRVTIHLRCRCRSTSKEQHGKLIILPDSLEELLKIAGKQQY 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1378 469 SUPERFAMILY cAMP-binding domain-like 31 221 IPR018490 -
Lal5g1378 469 CDD CAP_ED 104 217 IPR000595 -
Lal5g1378 469 Gene3D Helix hairpin bin 27 91 - -
Lal5g1378 469 Pfam Cyclic nucleotide-binding domain 124 207 IPR000595 -
Lal5g1378 469 ProSiteProfiles cAMP/cGMP binding motif profile. 104 206 IPR000595 -
Lal5g1378 469 Gene3D Jelly Rolls 92 225 IPR014710 -
Lal5g1378 469 Pfam KHA, dimerisation domain of potassium ion channel 429 467 IPR021789 -
Lal5g1378 469 MobiDBLite consensus disorder prediction 384 403 - -
Lal5g1378 469 SMART cnmp_10 104 221 IPR000595 -
Lal5g1378 469 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 466 - -
Lal5g1378 469 PANTHER POTASSIUM CHANNEL AKT1 1 466 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1378 Lal-Chr5 16461348 16464796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1378 11 467 Ion Channels AT4G18290 45.952 3.22e-123 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1378 K21867 - gmx:100811356 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1378 5 16461348 16464796 Lal5g1378 5 16461348 16464796 ECH
Lal5g1378 5 16461348 16464796 Lal3g0353 3 2333771 2337495 LSH