Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1360 ATGAAAATGACTTTTGAGCCATTAGATTGGTATTGTCAGCCAGTTGCACATGGAGTGTGGACAAAAGTAGTGGAAAATGCCTTTGGCGCTTACACTCCTTGTGCAGTCGACTCTTTGGTTATCTCTGTTTCACAGTTAATACTTCTAGGCTCATGCATCTACCGGATATGGTTGCTCAGGAAGGATTTTATGGTGAAGAGGTTCTGTTTGAGGTCCAAACTCTATAATTACATTCTGGGGTTGATAGCTGCATATTGTGTGGCAGAGCCGTTAGTGAGATTGTTCACGGGAATGTCAATTCTTAGTTTAGATGGGCAGACTCATCTTGCTCCATTTGAGATAGTTTCACTGATCGTTGAAGCTCTTGCTTGGTGCTCTATGCTGATTTTGATTGGTGTTGAAACTAAAGTCTACATCCATGAATTCCGATGGTTTGTCAGATTTGCTGCGATTTATAGTATAATAGGGAATGCTGTTTTGTTCAATCTCATCATTTCTGTGAAGGAGTTCTATAGCAGATCTGTGCTGTATTTGTACATCTCTGAGGTGGTCTTCCAGGCTTTGTTTGCAATACTTTTGCTGGTCTACATTCCTACTTTGGATCCTTATCCTGGTTATACCCCCATTCGGAGTGAATTGGTTACTGATGATACATATGATGAACTTCCTGGTGGAGAGATGATATGCCCTGAGAGGCATGCCAACATATTGTCAAAAATACTTTTTTCTTGGATGAATCCCCTCATGAGACTAGGTTATGAAAAACCACTTACAGAGAAAGACGTATGGAAATTAGATTCGTGGGATAGGACTGAGACACTGAACAACAATTTCCAGAGATGCTGGGATGAAGAGTCTATGAAGTCAAAACCTTGGCTTTTAAGAGCATTAAATGCAAGCCTTGGAGTAAGGTTTTGGTTTGGAGGCCTTTTCAAGATTGGCAATGATATTTCCCAATTTTTGGGCCCACTTATATTGAATCAGCTACTACAGTCTATGCAAAATGGTGATCCGGCATGGAGTGGCTACATTTATGCCTTCTCAATATTTGTTGGAGTGGTCTTTGGGGTGTTATGTGAAGGTCAATATTTTCAGAATGTCATGCGTGTTGGTTATCGGCTAAGATCAACACTGGTGGCTGCTGTTTTCCGCAAATCTCTAAGGCTTACTCATGAAGCCCGAAAACAATTTTCATCAGGAAAAATAACCAACTTAATGACTACTGATGCTGCGGCACTCCAGGCATGCTTTCTCTTATTTCTACAAATATGCCAGTCACTTCACACTTTGTGGTCAGCTCCATTTCGTATTATCGTTGCATTGGTTCTTCTTTACCAACAACTAGGCGTTGCTTCACTCCTTGGTGCTTTGATGCTAGTTTTTTTGTTTCCATTACAGACATTTATCATCAGTAGAATGCAGAAGTTGTCTAGGGAAGGATTACAACGTACTGACAAGAGAATTAGTCTTATGAACGAAATTTTGGCTGCTATGGACACTGTAAAATGTTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTACAGAGTGCTCGAAATGATGAGTTATCTTGGTTTCGGAAAGCATCATTACTGGGTGCGTTAAATGGATTTATTCTAAACAGCACCCCTGTTGTTGTAACTGTGATTTCATTTGGAGTCTTCACCTTGCTTGGAGGGGATTTGACACCAGCGAGAGCTTTTACTTCACTTTCTCTCTTTGCTGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATATTATAACTCAGGTGGTTAATGCAAATGTATCTTTGAAGCGTCTGGAGGAGTTGCTCTTAGCAGAAGAGAGAATACTTATACCAAATCCACCTCTTGAGCCTGGGTTACCGGCCATCTCGATAAAGAATGGATATTTTTCTTGGGATGCAAAGGCAGAGAGCGCCACATTATCAAACATAAACTTGGATATACCTTCTGGTAGCTTAGTTGCAATTGTTGGCAGTACTGGAGAAGGGAAGACGTCCCTCATATCTGCAATGCTTGGCGAACTTCCTCCAATTGCAGATTCAACTGTTGTTATGAGAGGGACAGTTGCTTATGTACCCCAAGTTTCGTGGATTTTTAATGCAACTGTACGGAATAACATTTTATTTGGTTCTGCCTTTGACCCAATACGATATGGAAGGTCAATGGATGTGACTGAACTGAAGCACGACCTTGAGTTACTGCCTGGTGGTGATCTAACTGAAATTGGTGAAAGAGGGGTAAACATCAGTGGTGGCCAAAAGCAGAGAGTATCCATGGCTAGAGCTGTCTATTCCAATTCTGATGTGTACATCTTTGATGACCCCCTAAGTGCTTTGGATGCGCATGTTGCTAGACAGGTTTTTGAAAAATGCATCAAGGGAGAATTGAGGGGGAAGACCCGAGTTCTTGTTACAAATCAGCTGCATTTCCTATCACAGGTTGATAGAATTATTTTGGTCCATGAAGGTGTGGTGAAAGAGGAGGGAACATTTGAAGAGCTCTCTAACCAAGGGCCATTTTTCCAAAAGCTTATGGAAAATGCGGGAAAGATGGAGGAGTACGAAGAAGAAAATGTAGATATTGAAACCACTGATCAGAAGTCATCTTCAAAACCAGTGGCCAATGGAGTATTTACTGATCATGCAAACAGTGAAAGTAAACCAAAAGAAGGAAAATCTGTACTTATTAAAAAGGAAGAACGTGAAACAGGTGTTCTCAGTTTGAATGTTGTAAAAAGGTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTTTTGTACTCTTTGCATGCTATGTCTTGACAGAGGTGTTACGAGTGTGCAGTAGTACATGGTTAAGCTATTGGACTGATCAGAGTGCTTCTGTGTATTATAATCCTGGATACTTCAATCTGATATATGCAGCTCTAGCCTTTGGTCAGGTTATGGTGACTTTAACAAATTCTTATTGGTTAATCGTATCAAGTCTTCGTGCTGCCCGAAAGTTGCATGAAGCCATGCTTCACTCCATATTACGAGCTCCTATGGTTTTTTTTCAAACAAATCCACTTGGAAGGATTATCAACAGGTTTGCAAAGGATCTAGGTGACATTGATCGTAGTGTTGCCCCATTTGTGAATATGTTTCTGGGTCAATTATCCCTGCTCTTTTCAACATTCATCCTGATAGGGATTGTCAGCACAATGTCCCTGTGGGCGATATTGCCATTGTTAATAGTGTTTTATGGCGCGTATCTGTACTATCAGAGCACAGCCCGTGAAGTGAAGCGGCTAGATTCAATTAGCAGATCTCCTGTTTATGCACAATTTGGAGAAGCACTTAATGGTCTATCAACAATTCGTGCTTACAAAGCTTATGATCGAATGGCTTCTATCAATGGGGATTCCATGGACAACAACATACGATTCACTCTTGTGAACATGAGTGGAAATCGATGGCTCTCAATCCGCTTGGAAACTTTGGGAGGCATCATGGTATGGTTTACTGCAACCTTTGCTGTGTTGCAGAATGGGAGGGCAGAGAATCAGCAAGAATTTGCATCAACTATGGGATTGCTACTTAGTTATGCTTTGAATATTACTACTTTGCTGACTTCTGTGCTCAGGCTTGCAAGTATGGCAGAGAATAGTTTAAATGCAGTTGAGAGGATTGGCACCTATGTAGATTTGCCTTCAGAGGCTCCATCAATCATTGATGATAGTCGACCTCCTTCTGGGTGGCCCTCATCTGGATCAATTAGATTTGAAGATGTTGTTCTTCGGTACAGGCCTGAACTTCCTCCTGTTCTGCATGGCTTGACTTTCACAATTTTTCCTAGTGATAAGGTTGGCATTGTTGGGAGGACAGGAGCAGGAAAATCTAGCATGCTTAATGTTTTATTTAGAATTGTGGAATTGGAAAGAGGAAGGATATTGATTGATGATTGTGATGTTGCAAAGTTTGGTCTGGCTGATTTACGTAAAGTTCTTGGAATTATACCACAATCTCCCGTTCTCTTCTCAGGAACTGTGAGATTTAACCTTGATCCTTTTAATGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACACTTGAAGGAAGTGATACGTAGGAATTCTTTGGGGCTGGATGCTGAGGTATCTGAGGCAGGGGAGAACTTCAGTGTTGGACAGAGGCAACTGTTGAGTCTTGCCAGGGCATTATTGCGCCGATCAAAGATATTAGTACTTGATGAGGCAACTGCAGCAGTTGATGTTAGGACAGATGCACTCATACAGAAAACAATCCGAGAGGAATTTAAATCCTGTACAATGCTCATTATTGCTCATCGTCTTAACACCATTATTGACTGTGATCGAATTATTTTGCTCGATGCTGGTAAGGTTCTTGAATATGATACCCCTGGTGAGCTGCTATCAAATGAAGGCAGTGCTTTCTCTAAGATGGTGCAGAGTACAGGAGCTGCAAACGCCCAATACTTACGCAGCTTGGCAATTGGTGGGGACAAGGTAGAAAGACGAGAAAACAAGCCTCTAGATGACCATAGGAAATGGATGGCTTCTTCCGGCTGGGCTTCTGCTGCCCAATTTGCTCTTGCTTCCAGTCTCACCTCATCACAGAATGACCTGCAAAAGCTGGAAATAGAAGATGAAAACAGTATTCTCAAGAAGACAAAGGATGCTGTGATCACTTTGCAGAGGGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGAAATCTTTAGACGAACACCAAATATCCCCAGATGGATGGTGGTCATCACTTTACAAGATGATTGAAGGTCTTGCTATGATGAGCAGATTAGCCAGCAACAGGCTCCAACAATCAGATTACAGTTTTGATCAAGCTGACATATAG 4866 0.4162 MKMTFEPLDWYCQPVAHGVWTKVVENAFGAYTPCAVDSLVISVSQLILLGSCIYRIWLLRKDFMVKRFCLRSKLYNYILGLIAAYCVAEPLVRLFTGMSILSLDGQTHLAPFEIVSLIVEALAWCSMLILIGVETKVYIHEFRWFVRFAAIYSIIGNAVLFNLIISVKEFYSRSVLYLYISEVVFQALFAILLLVYIPTLDPYPGYTPIRSELVTDDTYDELPGGEMICPERHANILSKILFSWMNPLMRLGYEKPLTEKDVWKLDSWDRTETLNNNFQRCWDEESMKSKPWLLRALNASLGVRFWFGGLFKIGNDISQFLGPLILNQLLQSMQNGDPAWSGYIYAFSIFVGVVFGVLCEGQYFQNVMRVGYRLRSTLVAAVFRKSLRLTHEARKQFSSGKITNLMTTDAAALQACFLLFLQICQSLHTLWSAPFRIIVALVLLYQQLGVASLLGALMLVFLFPLQTFIISRMQKLSREGLQRTDKRISLMNEILAAMDTVKCYAWESSFQSKVQSARNDELSWFRKASLLGALNGFILNSTPVVVTVISFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEELLLAEERILIPNPPLEPGLPAISIKNGYFSWDAKAESATLSNINLDIPSGSLVAIVGSTGEGKTSLISAMLGELPPIADSTVVMRGTVAYVPQVSWIFNATVRNNILFGSAFDPIRYGRSMDVTELKHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVFEKCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGVVKEEGTFEELSNQGPFFQKLMENAGKMEEYEEENVDIETTDQKSSSKPVANGVFTDHANSESKPKEGKSVLIKKEERETGVLSLNVVKRYKNALGGFWVVFVLFACYVLTEVLRVCSSTWLSYWTDQSASVYYNPGYFNLIYAALAFGQVMVTLTNSYWLIVSSLRAARKLHEAMLHSILRAPMVFFQTNPLGRIINRFAKDLGDIDRSVAPFVNMFLGQLSLLFSTFILIGIVSTMSLWAILPLLIVFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMASINGDSMDNNIRFTLVNMSGNRWLSIRLETLGGIMVWFTATFAVLQNGRAENQQEFASTMGLLLSYALNITTLLTSVLRLASMAENSLNAVERIGTYVDLPSEAPSIIDDSRPPSGWPSSGSIRFEDVVLRYRPELPPVLHGLTFTIFPSDKVGIVGRTGAGKSSMLNVLFRIVELERGRILIDDCDVAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKEVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIILLDAGKVLEYDTPGELLSNEGSAFSKMVQSTGAANAQYLRSLAIGGDKVERRENKPLDDHRKWMASSGWASAAQFALASSLTSSQNDLQKLEIEDENSILKKTKDAVITLQRVLERKHDKEIEKSLDEHQISPDGWWSSLYKMIEGLAMMSRLASNRLQQSDYSFDQADI 1621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1360 1621 Pfam ABC transporter 642 777 IPR003439 GO:0005524
Lal5g1360 1621 Pfam ABC transporter 1263 1411 IPR003439 GO:0005524
Lal5g1360 1621 MobiDBLite consensus disorder prediction 866 883 - -
Lal5g1360 1621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 848 IPR003439 GO:0005524
Lal5g1360 1621 PANTHER ABC TRANSPORTER C FAMILY MEMBER 1 37 1520 - -
Lal5g1360 1621 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Lal5g1360 1621 Gene3D ABC transporter type 1, transmembrane domain 278 610 IPR036640 GO:0005524|GO:0016021
Lal5g1360 1621 Gene3D ABC transporter type 1, transmembrane domain 891 1227 IPR036640 GO:0005524|GO:0016021
Lal5g1360 1621 SMART AAA_5 1272 1465 IPR003593 -
Lal5g1360 1621 SMART AAA_5 651 825 IPR003593 -
Lal5g1360 1621 Gene3D - 1229 1482 IPR027417 -
Lal5g1360 1621 SUPERFAMILY ABC transporter transmembrane region 922 1232 IPR036640 GO:0005524|GO:0016021
Lal5g1360 1621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1246 1480 IPR003439 GO:0005524
Lal5g1360 1621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 926 1209 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g1360 1621 Pfam ABC transporter transmembrane region 925 1172 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g1360 1621 Pfam ABC transporter transmembrane region 306 580 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g1360 1621 Gene3D - 619 873 IPR027417 -
Lal5g1360 1621 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 37 1520 - -
Lal5g1360 1621 MobiDBLite consensus disorder prediction 862 894 - -
Lal5g1360 1621 CDD ABC_6TM_ABCC_D2 925 1221 IPR044726 GO:0140359
Lal5g1360 1621 SUPERFAMILY ABC transporter transmembrane region 291 604 IPR036640 GO:0005524|GO:0016021
Lal5g1360 1621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1238 1477 IPR027417 -
Lal5g1360 1621 CDD ABC_6TM_ABCC_D1 307 599 IPR044746 GO:0140359
Lal5g1360 1621 CDD ABCC_MRP_domain1 624 824 - -
Lal5g1360 1621 ProSitePatterns ABC transporters family signature. 1383 1397 IPR017871 GO:0005524
Lal5g1360 1621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 847 IPR027417 -
Lal5g1360 1621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 592 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g1360 1621 CDD ABCC_MRP_domain2 1244 1464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1360 Lal-Chr5 16258534 16278780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1360 591 840 Calmodulin-binding Proteins AT2G36910 26.119 1.25e-21 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1360 5 16258534 16278780 Lal11g0520 11 4168547 4188391 LSH