Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1355 ATGAGCGATGGCGTTTCCACTTTCCATCTCGAGAGAATGGGCAGAGAACTCAAATGTCCTATTTGTTGGAGTTTGCTTAATTCTTCAGTTTCACTTACCTGCAACCATGTATTCTGCCATTCATGTATTCTCAAATCGATGAAATTAGCTTCCGATTGTCCTGTTTGTAAAGTACCTTACACTCGTAGAGAGGTTCGCCCTGCTCCTCACATGGACAACATGGTCAGCATTTACAAGAGTATGGAAAATGCTGCTGGGATTAGTATGTTTGTCACTCAGAATGTACCCGTTACTAAATTATCAGATGAAGAAAAGCAACATGAAGATGCTTGTGAAATGAAGGATGTTGGTGAAAATCATAAGAGTCGTGCACAAAATAAAAATTCCTTCAGAAAAAAGGAGTCAAAGAAGAAGATAATGACAAGCACAAAAGGTATTAACATTGCAAAACCATCCTTTCCAGCTAAGAAAAGGATTCAGGTGTCTCAGGATCCTCTTTCAGAAACGCCATTAAAGAATTATAAGCTTGGAGACTCTCTAAGTGAAATTGATAAAGTGGGAACAGAAGAGGGTTTGATCTTGCAAAATGAAAGGTCTCACCAAAATGAAAAGGACAGTCATGTTCTTTCACCTTTCTTTTGGTTAAGAGACGAGGAAGATGGTGAAAAGATAAGTCAGCACTCTAATGGGGATCAACTTATTGATTGTGCAACACCAACTCCTCCTTCATTCAGTGACTTGAAGGACTATGATGATGAAAGCCCTTCTAAAAAATCTCCATCGGATGAGGTGCAAAAAAAAGCTTCTGTTAATTTACCTGATAGTGAGATTTTTGAATGGACACAAAGGCCTTGCTCTCCTGAATTATTTTCGAGTCCTGTCAAAATGCAGGTTGAGGATACTCGTGAGATTGATAGAAATCAAGAGGATTTTGTTGCATCGGCACATGAGCTGGAAAAAAATTGTACAATTGCTGACAACATTAAATTTAAGAATTCCAAAGAAGGAAATGGATTGGATGACAAGTTACCACAAACCGTGGCTTCTCAAATTATAACTTCGGATGGTCAAAATGGGATGAAAAAGTGTACAAAGAGAGATAGGAAAGCTAGGGGAAAAGCAAGTCAAAGCAAGACTAGGGAACAAAGAGATCCAATTGATGGAATGGATGTTGATACATATATATCATTAGAAGACAATCAGGACAAAACATTGGACCATAAGCACAATTCTGCTAATTTGGGGAAAACTAATCGAAGAACCCGTAGAAATCAAATATCTCAAACGGCTTGCACAGCCTCCAATACATTAGTTCCGAGTAATGGTGAAATGGATATGGCAAAGAATTCATCACATAAAGAAGAAATTGAGAAGCATCAGGAGGTTGCTGGGAAGAGCAAGAGGAAAAGATCTGAAAGACAAAAGCTGGATTATGTGCAGGACCTAGCTGAAGAATTATATCCAATGCAGAACAAAACCAATGAGTTTGCTGTTTCTCTATCATCGGTTTTGACTCCTGCGATGGAAGATATTGGAAAGGCCTCTAGGCAAAGCATAAGAAACTCTTATAGAAAATCCATGTCTTGCAATAGAGAACTGGGGAGTACTAAAAAGTTGAAACTTTCCTCTGATGGTATCATTAAGACTACAAATGATGGAGAAATCCAACCTAATGCAAGTCTTCAACTAATTCCTGATGTTAAAGCTTTGAATGATACATCAAAAGAGACCCAATGTCCTTTGATGAATCAGCCAGTTTTACAGAAATGTGGAAGCCATATGAAAAAGTATCAGTGTGTTTTCTGTCTCTCATCAGTAGAATCAGAGGTTTCTGGACCGATGGTACATTATTATGACGGGAAGCCTGTAACTACAGATTATGAAGGAGGATACAAAGTCACACATTCTCACAAGAATTGCACAGAATGGGCCCCAAATGTATATTTTGTTGATGATAAGGCAATAAATCTTGAAGCTGAAATAAGCAGAAGTAAGAGAATTAAATGTTGTTTGTGTGGACTCAAAGGCGCTGCACTAGGTTGTTACGAGAAGAGTTGTCGCAAGAGCTTTCATGTTCCTTGTGCCAAGTTAACTTCTCAATGTCGATGGGACATGGAAAACTTTGTCATGTTATGCCCTTTGCATGCTTCTTCCAAGTTGCCCTGTGAAAGTTCAGGATCCCAAGAAAGGAGTAACAAAACCACAGCTAGAGAGAGTAAAAGCCCTGCTCGCAAACATGGCAATACAGTCGAAAGTTGGACTGCTCGTGGAACATCCAACAAATTAGTACTCTGTTGTTCAGCCCTATCCGTGCAGGAGAAGGCTGTTGTTTCTGAATTTGAAAAAGTGTCCAAGGTTACAGTTTTGAAAAAATGGGATTCAAGTGTCACCCATGTTATAGCATCAACAGATGAAAATGGGGCATGCAGAAGGACCCTCAAAGTATTGTTGGGTATCCTGGAGGGAAAGTGGATTCTCAACATTGATTGGATCAAAGCTTGCATGAAGGAGATGGGACCTGTTGATGAGGAGCATTATGAAATTAATGTTGACATCCATGGAATCAAGGATGGTCCTCGTCTTGGACGACTGAGAGTACTGAATAAGCAACCAAAACCTTTTAATGGCTACACGTTTTATTTTATGGGACATTTTGACCCGTCATACAAGGGCTATCTGCAAGACCTTGTGATTGCTGCTGGAGGGATTATTTTGCATAGAAAACCTGTCTCTGCTGACCAGACCCTCATCATTTACAGCCTTGAGCTTCCTGGTAAGTGCAGTCCTTCAAAAAAGGATAAAATTTTAAGCCAGAGGCTATGCGATTCAGAGGTTCTAGCAAGTTCTACAGGTTCAAGGGTAGCAAGTAATACATGGATTCTGAATTCTATTGCAGCCTGCAAGCTCCAAAGCCCTGCTCTATAA 2925 0.3969 MSDGVSTFHLERMGRELKCPICWSLLNSSVSLTCNHVFCHSCILKSMKLASDCPVCKVPYTRREVRPAPHMDNMVSIYKSMENAAGISMFVTQNVPVTKLSDEEKQHEDACEMKDVGENHKSRAQNKNSFRKKESKKKIMTSTKGINIAKPSFPAKKRIQVSQDPLSETPLKNYKLGDSLSEIDKVGTEEGLILQNERSHQNEKDSHVLSPFFWLRDEEDGEKISQHSNGDQLIDCATPTPPSFSDLKDYDDESPSKKSPSDEVQKKASVNLPDSEIFEWTQRPCSPELFSSPVKMQVEDTREIDRNQEDFVASAHELEKNCTIADNIKFKNSKEGNGLDDKLPQTVASQIITSDGQNGMKKCTKRDRKARGKASQSKTREQRDPIDGMDVDTYISLEDNQDKTLDHKHNSANLGKTNRRTRRNQISQTACTASNTLVPSNGEMDMAKNSSHKEEIEKHQEVAGKSKRKRSERQKLDYVQDLAEELYPMQNKTNEFAVSLSSVLTPAMEDIGKASRQSIRNSYRKSMSCNRELGSTKKLKLSSDGIIKTTNDGEIQPNASLQLIPDVKALNDTSKETQCPLMNQPVLQKCGSHMKKYQCVFCLSSVESEVSGPMVHYYDGKPVTTDYEGGYKVTHSHKNCTEWAPNVYFVDDKAINLEAEISRSKRIKCCLCGLKGAALGCYEKSCRKSFHVPCAKLTSQCRWDMENFVMLCPLHASSKLPCESSGSQERSNKTTARESKSPARKHGNTVESWTARGTSNKLVLCCSALSVQEKAVVSEFEKVSKVTVLKKWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILNIDWIKACMKEMGPVDEEHYEINVDIHGIKDGPRLGRLRVLNKQPKPFNGYTFYFMGHFDPSYKGYLQDLVIAAGGIILHRKPVSADQTLIIYSLELPGKCSPSKKDKILSQRLCDSEVLASSTGSRVASNTWILNSIAACKLQSPAL 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1355 974 ProSiteProfiles Zinc finger RING-type profile. 19 57 IPR001841 -
Lal5g1355 974 SUPERFAMILY RING/U-box 9 79 - -
Lal5g1355 974 MobiDBLite consensus disorder prediction 113 140 - -
Lal5g1355 974 ProSiteProfiles BRCT domain profile. 869 964 IPR001357 -
Lal5g1355 974 MobiDBLite consensus disorder prediction 356 425 - -
Lal5g1355 974 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 88 IPR013083 -
Lal5g1355 974 MobiDBLite consensus disorder prediction 720 751 - -
Lal5g1355 974 SUPERFAMILY BRCT domain 762 855 IPR036420 -
Lal5g1355 974 MobiDBLite consensus disorder prediction 246 264 - -
Lal5g1355 974 SUPERFAMILY BRCT domain 872 972 IPR036420 -
Lal5g1355 974 MobiDBLite consensus disorder prediction 221 270 - -
Lal5g1355 974 Pfam PHD-like zinc-binding domain 637 715 - -
Lal5g1355 974 MobiDBLite consensus disorder prediction 113 173 - -
Lal5g1355 974 SMART ring_2 19 56 IPR001841 -
Lal5g1355 974 ProSiteProfiles Extended PHD (ePHD) domain profile. 596 716 IPR034732 -
Lal5g1355 974 Pfam Zinc finger, C3HC4 type (RING finger) 18 56 - -
Lal5g1355 974 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 7 971 - -
Lal5g1355 974 MobiDBLite consensus disorder prediction 396 413 - -
Lal5g1355 974 Gene3D BRCT domain 759 864 IPR036420 -
Lal5g1355 974 ProSitePatterns Zinc finger RING-type signature. 34 43 IPR017907 -
Lal5g1355 974 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 718 IPR013083 -
Lal5g1355 974 CDD BRCT_Bard1_rpt1 762 837 - -
Lal5g1355 974 Gene3D BRCT domain 870 967 IPR036420 -
Lal5g1355 974 MobiDBLite consensus disorder prediction 374 388 - -
Lal5g1355 974 MobiDBLite consensus disorder prediction 448 473 - -
Lal5g1355 974 SMART PHD_3 668 716 IPR001965 -
Lal5g1355 974 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 7 971 IPR031099 GO:0006281|GO:0006974
Lal5g1355 974 ProSiteProfiles BRCT domain profile. 787 848 IPR001357 -
Lal5g1355 974 SMART BRCT_7 871 967 IPR001357 -
Lal5g1355 974 SMART BRCT_7 756 838 IPR001357 -
Lal5g1355 974 Pfam BRCA1 C Terminus (BRCT) domain 787 835 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1355 Lal-Chr5 16231419 16237815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1355 16 57 C3H Transcription Factor Family AT3G07200 38.095 3.39e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1355 K10683 - gmx:100804958 1197.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1355 5 16231419 16237815 Lal3g0371 3 2530028 2537935 LSH