Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1350 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCTGGAAGGGGGAAAGAGATGTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCTCTTGTTTCATTGCCAGCAATTGGAAGCCGTGTGTTTTACTTTCCACAAGGTCATAGTGAACAAAATCTTCAATTTTTTGGAATAAGCATGCTATCTGGTTCTTGTTTCTGTCCTGAAGCTGCTTCTAATTTGGAGGATGAGGTGGCCGTGTCAACCAACAAGGAAGTGGATGCCCATATCCCCAACTATCCGAGCTTACCACCTCAGCTCATTTGTCAGCTTCATAATCTGACTATGCATGCTGATGCCGAGACTGATGAAGTCTATGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAAGCATACCTTCCAGCAGAGTTGGGCACTCCTAGTAAACAGCCAACAAACTACTTTTGCAAAACATTGACGGCCAGTGACACAAGCACTCATGGAGGATTCTCTGTTCCTCGTCGGGCTGCTGAAAAAGTGTTTCCTCCATTGGACTTCTCTCAACAGCCTCCCTGCCAAGAGTTAATTGCAAGGGATTTGCATGGTATTGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGGCATCTTCTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTGTTGAATGAGAAGAACCAATTGCTTCTTGGCATTCGGCGGGCAAATCGACCACAAACTGTGATGCCTTCATCAGTTTTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCGGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCGTTTTCTATAACCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTCTCTGTTGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAGTCAAGTGTGAGACGATACATGGGAACAATAACTGGCATTAGTGACATGGATCCTGTTCGGTGGCCGAATTCACATTGGCGCTCAGTGAAGGTTGGCTGGGATGAATCCACTGCAGGAGATAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCACTAACAACATTTCCCATGTATCCGTCGCCATTCCCACTTAGGCTTAAACGACCATGGCCTCCGGGACTGCCTTCATTCCATGGCATGAAGGATGAAGATTTTGGCATGAATTCTCCAATGCTGTGGCTTCGAGACCCCGATAGAGGGCTTCAGTCTATTAACTTTCAGGGGATGGGGGTTAATCCTTGGATGCAGCAAAGGTTTGATCCGTCCATGCTGAACATGCAAACCGATATGTATCAAGCTGTGGCTGCCGCTGCTCTTCAGGATATGAGGACTTTAGATCCTTCCAAACATTATCCTGCTTCCTTAGTTCAATTTCAGCAACCACAGAACTTCGCAAACAGGACTGCTGCTTTAATGCAGGCCGAGATGTTGCAGCAGTCACAGTCGCAGCAGGCTTTTCAAAATAATCAAGAGAATCAGCAGTCATCTCAATCTCAGGTACAAACTCAGATGCATCTTCAGCAGCAGCTACAGCACCAACACTCGTTCAATAGTCAGCATCAGCTTCATCACAACCAACCACAACAAACGCAGCAGCAACAACAGCAACAACCACAGCAGATGGTAGATAATCAGCAGATTTCTAATGCAGTCTCTACAATGTCTCAGTTTATTTCGGCACCTCAATCTCAATCACCACTGATGCAAGCTATCTCTTCGCTGTCCCATCAACAAACGTTTTCTGATTCTAGTGGGAACCCTGCCAGTGTTGTTTCTCCCCTGCACAATATCTTGGGTTCGTTTGCCCTGGATGAAAACTCCCACCTTCTGAACCTTCCTAGAACAAGCTCTTGGATTCCTGTGCCAACTTCAACTGCATGGCCACCTGCCAAGCGTGTTGCAACGGATCCTCTCCTTTCTTCGGGGGCATCTCAATGTGCTTTGCTACAGGTAGATCAGTTAGGGCAGCCACAGAGTACCATGTCACAAAATGCCATTACATTACCCCCTTTTCCTGGTAGGGAGTGCTCAATAGATCAAGAAGGGAGCAACGATCCTCAAAATCATCTTTTATTTGGCGTTAATATAGAGCCCTCATCACTTCTAGTTCAAAATGGGATGGCAGGACTTAAGGGAGTTGGCGGCAACAGTGACTCCCCAACCATGCCATTTCAGTCTTCTAATTTCATGAATAACACAGGCAATGACTCTTCATTGAATCCTGGAATGACACAAAGCATTGGTGATTCAGGCTTCCTACAGACCCAAGAAAATGCAGGGCAAGAAAACTCTCCAAACAAGACCTTTGTCAAGGTTTATAAGTCAGGGTCCTTCGGGAGGTCATTAGATATCACTAAATTCAGCAGCTACCATGAACTGCGTAGTGAGCTTGCTCGTATGTTTGGCCTTGAAGGTGAGCTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGATGTTCTTCTCCTTGGTGATGGCCCTTGGCCGGAGTTCGTAAATAGTGTGTGGTGTATCAAGATACTTTCACCTCAAGAAGTGCAGCAGATGGGCAACACCGGCCTAGAGCTTCTGAATTCGGTTCCAATTCAAAGGCTCTCTAGTGGCATCTATGATGACTACATGAGCCGTCAGGACCCAAGAAGTCTAAGCACCGGAATAATAAGTGTCGGATCTTTAGAATACTAA 2793 0.4637 MRLSSAGFSPPPLEGGKRCLDSELWHACAGPLVSLPAIGSRVFYFPQGHSEQNLQFFGISMLSGSCFCPEAASNLEDEVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHGIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTVFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDMDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDEDFGMNSPMLWLRDPDRGLQSINFQGMGVNPWMQQRFDPSMLNMQTDMYQAVAAAALQDMRTLDPSKHYPASLVQFQQPQNFANRTAALMQAEMLQQSQSQQAFQNNQENQQSSQSQVQTQMHLQQQLQHQHSFNSQHQLHHNQPQQTQQQQQQQPQQMVDNQQISNAVSTMSQFISAPQSQSPLMQAISSLSHQQTFSDSSGNPASVVSPLHNILGSFALDENSHLLNLPRTSSWIPVPTSTAWPPAKRVATDPLLSSGASQCALLQVDQLGQPQSTMSQNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIEPSSLLVQNGMAGLKGVGGNSDSPTMPFQSSNFMNNTGNDSSLNPGMTQSIGDSGFLQTQENAGQENSPNKTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNTGLELLNSVPIQRLSSGIYDDYMSRQDPRSLSTGIISVGSLEY 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1350 930 CDD B3_DNA 152 250 IPR003340 GO:0003677
Lal5g1350 930 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal5g1350 930 Pfam B3 DNA binding domain 153 250 IPR003340 GO:0003677
Lal5g1350 930 ProSiteProfiles B3 DNA-binding domain profile. 153 252 IPR003340 GO:0003677
Lal5g1350 930 ProSiteProfiles PB1 domain profile. 797 881 IPR000270 GO:0005515
Lal5g1350 930 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 52 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal5g1350 930 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 77 910 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal5g1350 930 Pfam AUX/IAA family 785 882 IPR033389 -
Lal5g1350 930 SUPERFAMILY DNA-binding pseudobarrel domain 138 279 IPR015300 -
Lal5g1350 930 SUPERFAMILY CAD & PB1 domains 788 872 - -
Lal5g1350 930 SMART B3_2 153 252 IPR003340 GO:0003677
Lal5g1350 930 Gene3D - 793 886 - -
Lal5g1350 930 Gene3D - 314 386 - -
Lal5g1350 930 Gene3D - 151 251 IPR015300 -
Lal5g1350 930 MobiDBLite consensus disorder prediction 512 573 - -
Lal5g1350 930 PANTHER AUXIN RESPONSE FACTOR 77 910 - -
Lal5g1350 930 PANTHER AUXIN RESPONSE FACTOR 1 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1350 Lal-Chr5 16172513 16178851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1350 1 506 B3 DNA Binding Superfamily AT1G30330 79.572 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal5g1350 AUX_IAA 3.6e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1350 - - gmx:100798719 1435.62