Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1347 ATGGAACAAAACACAAAGCAAAAACCACCACCACCACCATCATCAGAAGATGAAAAAAACAAAGCAACCCAGAAAGTTTCCTTCTTCAAGCTCTTCACTTTTGCTGATACTCTTGACGTTACACTCATGATCATAGGCATTATCTTTTCTGTGGCTAATGGCTTGAATCAACCTATCATGACTCTGATTTTTGGAAAGCTTATTAACACATTTGGTTCAACCGATCCATCCCATATTGTTCATGAAGTTTCTAAGGTTGCATTGTTATTTATTTACCTGGCTATTGGGACTGGAGTTTCCTCCTTTCTACAGGTATCATGCTGGATTGTAACAGGAGAAAGACAAGCAGCTAGGATCCGTAGTTTGTACTTGAAAACTATATTGAAACAAGACATTGCTTTCTTTGACACTGAAACAACAACTGGAGAGGTTATTGGGAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAATTTATACAACTTGCTACAACTTTTATTGGTGGGTTTGTGATTGCCTTTATAAAAGGATGGCAAATGGCTATAGTTTTGCTTGCATGCATACCTTTAGTCATATTTTCTGGAGGAATCATGTCCATGATGTTGTCTAAAATGTCAAGTAGAGGCCAAATTGCTTATTCAAAAGCAGGAATTGTTGTTGAACAAACAGTTGGAGCCATTAGAACAGTTGCATCTTTTAATGGGGAGAAAAAAGCAATACAAATGTATAATATCAAGTTAAGAGATGCCTATAATACAATTGTTCTACAAGAGTTGGCTGCAGGGTCAGGAATGGGAGTACTCTTGTTAATTGTTTTTAGCACCTATGGACTTGCCATGTGGTATGGTTCCAAATTGATCATTGAGAAAGGATACAATGGTGGAACTGTCATCAACATAATCATAGCTCTTATGACAGGTGGAATGTCACTTGGTCAAACATCCCCATGCCTTAATGCATTTGCAGCAGGACAAGCAGCAGCATATAAAATGTTTGAGACAATCAAAAGAAAGCCCAAAATTGATGCTTATGACACAAATGGTGTTGTCTTGGAAGGCATAAAGGGAGATATTGAACTGAAAGATGTTCATTTCAGTTATCCTTCAAGACCAGATCAGAAAATCTTTGTTGGATTCTCATTATATGTTCCAAGTGGCACAACTGCTGCATTAGTGGGCCAAAGTGGAAGTGGAAAGTCCACTGTAATAAGCTTGTTAGAAAGATTCTATGATCCTGATGCTGGAGAAGTACTCATAGATGGTGTGAATCTGAAAAAGTTTCAAATTAGATGGATAAGAGAACAGATTGGACTTGTTGGTCAAGAACCTGTCTTGTTTGCAGCCAGTATCAGAGAGAATATATTATATGGCAAAGAAGGTGCAACTGATGAAGAGATAAATACAGCAATAACACTTTCTAATGCCAAAAAGTTCATTGACAAGCTTCCTCAGGGCCTTGACACAATGGCAGGAGAGCATGGAACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCTATTGCAAGGGCTATTTTGAAGAATCCAACAATTCTTCTTCTTGATGAAGCTACAAGTGCATTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCATTAGAGAGAGTTATGTCAAACCGGACTACTCTTGTTGTCGCGCATCGTTTGAGTACTATTAGAAATGCTGACACCATATCAGTGGTTCATAAAGGAAAAATTGTGGAACAAGGAACTCATGATGAGTTAATCAAGGATCCCGAGGGTGCTTTTTCTCAGCTTATTCGTCTACAAGAAGGACAAAAGGAAGATGAAGCAATCCAGAATTCCGAGGCAGATAAGTCAAATAATAGTTTTAATTCAGGTACTCACGAGAGTATATCGATGAGCCGAGGTTCATCAAGGAGTAGACACTCTCAGCCACTCAGCAATGTTCTTCCTTATCAAAATGTGGTACATCAGTCTGAAGAAAAAGCAAATGTTCATAAGGAAAAAAGTGAAGTTCAAGAGGTGAGTCACAAAAAGGTTTCTATAAGGCGCTTGGCCTATTTGAACAAGCCGGAGGTTCCTTTCTTACTGCTTGGATCCATCGGTGCAGCAGTGCAAGGTGTAGTGTTCCCTGTATTTGGCCTCTTGCTTTCATCAGCAATTACTATGTTCTTTAAACCTCCAGAGCAGTTGAAGAAAGATTCAATTTTTTGGTCGCTTTTATATGTGGGTTTGGGTTTTGTTACTCTCGTGGCCATACCAACTTCGTTTTACTTCTTTGGGATTGCTGGTGGAAAACTTATAGAACGAATTCGGTCATTGACATTTGAAAAGGTTGTCCACCAAGAAATCACTTGGTTTGATGATCCTTCAAATTCAAGTGGTGCTGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTTGTTGGGAACTCCCTGGCCCTCATTGTGCAAAACATAGCAACAATCACAGCAGGTCTAGTTATAGCATTCACGGCTAATTGGATACTCGCTTTTGTCGTATTGGCTGTATCACCCCTGCTGTTCATTCAAGGAGTCCTACAGATGAGGTTCATAAAAGGATTCAGTGCAGACGCCAAGGTTAAGTATGAAGAAGCAAGTCAAGTGGCAAATGATGCTGTTGGTAGCATCAGAACCGTTGCAGCATTTTGCGCTGAACCAAAAGTGATGGATATGTATAGGAAGAAATGTACAGGGCCAGAAAAACAAGGTGTTAGGTTGGGGCTTGTTAGTGGTATAGGATTAGGTTTCTCCTTTTTCGCTTTGTACTGCACAAATGCTTTCTGTTTCTACATAGGATCCATTCTTGTGCAACATGGGAAAGCAACCTTTCCAGAGGTTTTCAAGGTTTTTCTTTCTTTAACAGTGACCGCAATGGGCGTTTCTCAGAGTAGTTCCTTAGCACCAGACTCTAACAAGGCCAAAGAATCTGCTGCTTCAATATTTGAAATACTTGACAGAAAACCAGTGATTGATTCCAGCAGCACTGAGGGTACAACACTAGAAACCGTTGCCGGTGATATCGAACTTCAACATGTCAGCTTTAAATACCCAACAAGACCTGATATTCAAATCTTAAAGGATTTGTGCTTAACTATCCCTGCTGGAAAGACTGTTGCATTGGTTGGAGAAAGTGGCTGCGGAAAATCAACAATTATAAGCCTCTTAGAGAGATTTTACAATCCTGATTCAGGACAAATACTAATAGATGGAGTGGATATAAAAAAGTTCAGACTAAGTTGGTTAAGGAAACAAATGGGTTTGGTTGGTCAAGAGCCTGTTCTTTTCAACGAAAGCATTCGATCCAACATAGCATATAGCAAAGAAGGCGCGACCGAAGAAGAGATAGTAGCAGCAGCACAAACAGCAAATGCACACAAGTTTATAAGTTCTCTTCCAGATGGTTATGACACTTGTGTTGGAGAAAGAGGTATACAATTATCAGGAGGACAAAAGCAGCGCATCGCCATCGCGAGAGCAATGCTTAAAGACCCGAAAATTCTTTTGCTTGATGAGGCAACAAGTGCACTTGATGAAGAGTCACAACATATAGTTCAAGAAGCTCTAGATAGAGTTAGTGTGAACAGAACTACTGTTGTGATAGCTCATCGTCTTACAACAATTAAAGGGGCTGATATCATTGCAGTGATGATGAATGGTGTAGTTGCTGAGAAGGGAAGACATGATGCATTGATCAAGATTAATGATGGAGTTTATGCTTCAATGGTAGCTCTACATGAGAATGCATCATGA 3786 0.3983 MEQNTKQKPPPPPSSEDEKNKATQKVSFFKLFTFADTLDVTLMIIGIIFSVANGLNQPIMTLIFGKLINTFGSTDPSHIVHEVSKVALLFIYLAIGTGVSSFLQVSCWIVTGERQAARIRSLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLATTFIGGFVIAFIKGWQMAIVLLACIPLVIFSGGIMSMMLSKMSSRGQIAYSKAGIVVEQTVGAIRTVASFNGEKKAIQMYNIKLRDAYNTIVLQELAAGSGMGVLLLIVFSTYGLAMWYGSKLIIEKGYNGGTVINIIIALMTGGMSLGQTSPCLNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVLEGIKGDIELKDVHFSYPSRPDQKIFVGFSLYVPSGTTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKKFQIRWIREQIGLVGQEPVLFAASIRENILYGKEGATDEEINTAITLSNAKKFIDKLPQGLDTMAGEHGTQLSGGQKQRIAIARAILKNPTILLLDEATSALDAESERIVQEALERVMSNRTTLVVAHRLSTIRNADTISVVHKGKIVEQGTHDELIKDPEGAFSQLIRLQEGQKEDEAIQNSEADKSNNSFNSGTHESISMSRGSSRSRHSQPLSNVLPYQNVVHQSEEKANVHKEKSEVQEVSHKKVSIRRLAYLNKPEVPFLLLGSIGAAVQGVVFPVFGLLLSSAITMFFKPPEQLKKDSIFWSLLYVGLGFVTLVAIPTSFYFFGIAGGKLIERIRSLTFEKVVHQEITWFDDPSNSSGAVGARLSTDASTVKSLVGNSLALIVQNIATITAGLVIAFTANWILAFVVLAVSPLLFIQGVLQMRFIKGFSADAKVKYEEASQVANDAVGSIRTVAAFCAEPKVMDMYRKKCTGPEKQGVRLGLVSGIGLGFSFFALYCTNAFCFYIGSILVQHGKATFPEVFKVFLSLTVTAMGVSQSSSLAPDSNKAKESAASIFEILDRKPVIDSSSTEGTTLETVAGDIELQHVSFKYPTRPDIQILKDLCLTIPAGKTVALVGESGCGKSTIISLLERFYNPDSGQILIDGVDIKKFRLSWLRKQMGLVGQEPVLFNESIRSNIAYSKEGATEEEIVAAAQTANAHKFISSLPDGYDTCVGERGIQLSGGQKQRIAIARAMLKDPKILLLDEATSALDEESQHIVQEALDRVSVNRTTVVIAHRLTTIKGADIIAVMMNGVVAEKGRHDALIKINDGVYASMVALHENAS 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1347 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 698 984 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g1347 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Lal5g1347 1261 Gene3D - 363 636 IPR027417 -
Lal5g1347 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Lal5g1347 1261 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 1257 IPR039421 -
Lal5g1347 1261 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524
Lal5g1347 1261 SUPERFAMILY ABC transporter transmembrane region 25 346 IPR036640 GO:0005524|GO:0016021
Lal5g1347 1261 MobiDBLite consensus disorder prediction 616 646 - -
Lal5g1347 1261 MobiDBLite consensus disorder prediction 1 21 - -
Lal5g1347 1261 ProSitePatterns ABC transporters family signature. 1158 1172 IPR017871 GO:0005524
Lal5g1347 1261 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 21 1257 - -
Lal5g1347 1261 SMART AAA_5 1046 1238 IPR003593 -
Lal5g1347 1261 SMART AAA_5 392 578 IPR003593 -
Lal5g1347 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1255 IPR027417 -
Lal5g1347 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1019 1255 IPR003439 GO:0005524
Lal5g1347 1261 CDD ABC_6TM_Pgp_ABCB1_D2_like 687 1002 - -
Lal5g1347 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 330 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g1347 1261 Gene3D ABC transporter type 1, transmembrane domain 89 993 IPR036640 GO:0005524|GO:0016021
Lal5g1347 1261 CDD ABC_MTABC3_MDL1_MDL2 1019 1254 - -
Lal5g1347 1261 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Lal5g1347 1261 Pfam ABC transporter transmembrane region 43 315 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g1347 1261 Pfam ABC transporter transmembrane region 698 970 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g1347 1261 Gene3D - 1009 1261 IPR027417 -
Lal5g1347 1261 SUPERFAMILY ABC transporter transmembrane region 680 1000 IPR036640 GO:0005524|GO:0016021
Lal5g1347 1261 Pfam ABC transporter 386 532 IPR003439 GO:0005524
Lal5g1347 1261 Pfam ABC transporter 1037 1186 IPR003439 GO:0005524
Lal5g1347 1261 MobiDBLite consensus disorder prediction 607 646 - -
Lal5g1347 1261 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1347 Lal-Chr5 16126178 16132294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1347 4 1258 Calmodulin-binding Proteins AT2G36910 45.656 0.0 1084
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1347 5 16126178 16132294 Lal5g1347 5 16126178 16132294 ECH