Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1333 ATGGAGATGGGAGATGAGCATATAATTGGAAAAGGAGAAGAAGAGAGAAAGGAAAAAACTCAAGGGCTGAAACCTCTCTATTGTTTTCCAAACCAGGTTGAAGCCATGGATTTCACAAATCAATCCATGTCAGATTCTCAACAAAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGAATAGAGAACACCACAAATCGCCAAGTCACTTTCTGCAAAAGAAGAAATGGCCTTCTTAAGAAAGCATATGAGTTATCTGTGCTGTGTGATGCTGAGGTTGCTCTAATAGTCTTCTCTACTCGGGGCCGTCTCTATGAATATGCTAATAACAAGTACCTTCTTTCTAAATACTCAAATATTTCAATCTTATATGCTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTTGAAGTGAGTGAGGTAATTGTTGGCAGAGACAACGTACGACAATTGAAGTTAGCCAATGGGAGAGTTCTGAGAATTTGGCTTCTTCCATGCAATGGGAAGCGTAAAACTATTGCTCCTGCTTCTTCTGCTGTAGCACAGAAGTTGAAATGGACGGCTGTGATTTTATGTCAAAAATAA 585 0.4034 MEMGDEHIIGKGEEERKEKTQGLKPLYCFPNQVEAMDFTNQSMSDSQQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNKYLLSKYSNISILYAQRERERERERVEVSEVIVGRDNVRQLKLANGRVLRIWLLPCNGKRKTIAPASSAVAQKLKWTAVILCQK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1333 194 Gene3D - 63 131 IPR036879 GO:0003677|GO:0046983
Lal5g1333 194 PANTHER MADS BOX PROTEIN 47 119 - -
Lal5g1333 194 MobiDBLite consensus disorder prediction 1 20 - -
Lal5g1333 194 ProSitePatterns MADS-box domain signature. 53 107 IPR002100 GO:0003677|GO:0046983
Lal5g1333 194 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 60 107 IPR002100 GO:0003677|GO:0046983
Lal5g1333 194 SUPERFAMILY SRF-like 52 118 IPR036879 GO:0003677|GO:0046983
Lal5g1333 194 SMART madsneu2 51 110 IPR002100 GO:0003677|GO:0046983
Lal5g1333 194 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 47 119 - -
Lal5g1333 194 ProSiteProfiles MADS-box domain profile. 51 111 IPR002100 GO:0003677|GO:0046983
Lal5g1333 194 PRINTS MADS domain signature 53 73 IPR002100 GO:0003677|GO:0046983
Lal5g1333 194 PRINTS MADS domain signature 73 88 IPR002100 GO:0003677|GO:0046983
Lal5g1333 194 PRINTS MADS domain signature 88 109 IPR002100 GO:0003677|GO:0046983
Lal5g1333 194 CDD MADS_MEF2_like 52 121 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1333 Lal-Chr5 16024217 16026764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1333 33 110 MADS-box Gene Family AT3G58780 76.923 1.64e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal5g1333 SRF-TF 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1333 K09264 - qsu:112006550 137.117