Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1328 ATGGCTGATAATTCTTCACAAAATGATGCTGTGGTTGTAAACGTGCATGACGACGATGCATCCATTGATGTCCCTGTTCCTATTTGGCAGAAGTTGTTAGCAGAGGTGTTGGGCACGTACTTCATGATGTTTGCAGGGTGTGGTGCTGTGGTGGTGAACCTTGATAATGAGAAGGTGGTAACACATCCTGGGATTGCAGTTGTTTGGGGACTTGTTGTGATGGTTTTGGCTTACACTCTTGGTCATATTTCTGGTGCTCATTTCAACCCTGCTGTTACCATTGCTCATGCTTCCATCAATAGGTTTCCTTTGAAGGAGGTTCCACCTTATATTGTAGCTCAGGTAATTGGATCGTTACTTGCAAGTGGAACACTTAAACTTATATTTAGTGGTGGAGAAAACCAGTTTATAGGAACACTTCCATCTGGGTCTTACTTGCAAGCTTTTGTGATTGAGTTCATAATCACCTTCTACCTCATGTTTGTTATTTCTGGAGTTGCTACTGATAACAGAGCGATTGGCGAGTTGGCTGGACTTGCAGTTGGGTCAACAGTATGTCTAAATGTGTTGTTTGCCGGGCCATTAACTGGGTCATCAATGAACCCAGGAAGAAGCTTAGGACCTGCAATTGTATACAATGAATACAAAGGAATATGGATTTACATGGTGTCACCAATTTTGGGAGCTGTGGCTGGTACATGGGTCTACCATTTCATTAGATACACCAAAAAGCCAGTGCGTGAAATCACAAAAAGTGCCTCTTTCCTTAAAGGACGAAATGGAGCTGAGTGA 792 0.428 MADNSSQNDAVVVNVHDDDASIDVPVPIWQKLLAEVLGTYFMMFAGCGAVVVNLDNEKVVTHPGIAVVWGLVVMVLAYTLGHISGAHFNPAVTIAHASINRFPLKEVPPYIVAQVIGSLLASGTLKLIFSGGENQFIGTLPSGSYLQAFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVCLNVLFAGPLTGSSMNPGRSLGPAIVYNEYKGIWIYMVSPILGAVAGTWVYHFIRYTKKPVREITKSASFLKGRNGAE 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1328 263 ProSitePatterns MIP family signature. 87 95 IPR022357 -
Lal5g1328 263 CDD MIP 30 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal5g1328 263 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Lal5g1328 263 TIGRFAM MIP: MIP family channel proteins 34 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal5g1328 263 SUPERFAMILY Aquaporin-like 26 250 IPR023271 -
Lal5g1328 263 Pfam Major intrinsic protein 27 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal5g1328 263 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 17 258 - -
Lal5g1328 263 PRINTS Major intrinsic protein family signature 30 49 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal5g1328 263 PRINTS Major intrinsic protein family signature 69 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal5g1328 263 PRINTS Major intrinsic protein family signature 106 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal5g1328 263 PRINTS Major intrinsic protein family signature 151 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal5g1328 263 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal5g1328 263 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal5g1328 263 PANTHER AQUAPORIN NIP2-1 17 258 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1328 Lal-Chr5 15962536 15965649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1328 26 257 Major Intrinsic Protein MIP AT5G37820 61.638 1.30e-98 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1328 K09874 - gmx:100786924 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1328 5 15962536 15965649 Lal5g1328 5 15962536 15965649 ECH
Lal14g1227 14 14168460 14172134 Lal5g1328 5 15962536 15965649 PCT
Lal19g0780 19 11954791 11958023 Lal5g1328 5 15962536 15965649 PCT
Lal5g1328 5 15962536 15965649 Lal14g1227 14 14168460 14172134 PCT
Lal5g1328 5 15962536 15965649 Lal19g0780 19 11954791 11958023 PCT