Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1322 ATGACTAGAAAGAAGGTGAACCTTGAATACATAACCAATGAATCAAAGAGAAAGGCAACATACAAGAAGAGAAAAAGTTGTCTGCTCAAGAAGGCTAATGAGATAAGCACTCTCTGTGGTATCCAAGCTTGTGCTATAGTATATAGTCATGATGAACCAAATCCAGAGGTTTGGCCATCCCATTTTGAAGTCCAAAGAGTTCTCCACAAATTTGAGACATTGCCTAAATTGGAAAAGGACAAAAAGATGTTGGATCAAGAAACTTTCTTGAAGAAACGCATCAACAAGGCTCGAGAACAGTTAATAAAGCAAAGGAATGAGAACATGAAGAAAAAGATGGACCTTCTCATGTTTAAATGCTTGAGTACTGGGACCATTGTTGATAACAATATTGATGTGAATTGTTTCTCGTGGGTGATTGATGAAACTTTGAAGGAAGTTGAATGTAAAAGGACTAGGGACCAATCTCAAGGTGGGATTCATGTGGCTGAAAATGGATCAAGAACTTTGAGTGAAGAGAAGGAACTTGTGGATGCTATGCTGAAGCAGGATTGGTTAATGGATTCAGTTCATTCTGTTGGAAATGAGATGCTTCACTTTTGA 603 0.3798 MTRKKVNLEYITNESKRKATYKKRKSCLLKKANEISTLCGIQACAIVYSHDEPNPEVWPSHFEVQRVLHKFETLPKLEKDKKMLDQETFLKKRINKAREQLIKQRNENMKKKMDLLMFKCLSTGTIVDNNIDVNCFSWVIDETLKEVECKRTRDQSQGGIHVAENGSRTLSEEKELVDAMLKQDWLMDSVHSVGNEMLHF 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1322 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal5g1322 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal5g1322 200 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lal5g1322 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lal5g1322 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal5g1322 200 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
Lal5g1322 200 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lal5g1322 200 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal5g1322 200 Coils Coil 87 114 - -
Lal5g1322 200 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lal5g1322 200 PANTHER MADS BOX PROTEIN 2 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1322 Lal-Chr5 15915787 15916389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1322 1 171 Type I MADS-box Gene Family AT5G48670 47.977 6.35e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal5g1322 SRF-TF 9.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1322 - - lang:109338749 312.768