Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1321 ATGGCTAGAAAGAAAGTAAACCTAGCATACATAGCCAATGATTCAAAGAGAAAGGAATCATACAAAAAGAGGAAAAATAGTTTGATCAAGAAGACCAATGAAATCAGCACCCTTTGTGGTATTGATGCTTGTGCTATAATATATGGTCAAAATGAACCTCAACCAGAAGTTTGGCCATCCCATTTAGGGGTCCAAAGGGTTCTTCACAAGTTTGGGAGAATGTCTCAGATGGAGCAAAGCAAAAAGATGATGAATCAAGAAACCTTTTTGAAACAAAGCATCATTAAGGCCAAAGAGCAGCTGAAGAAGCAGAAGAATGAGAATCGAAAGAAGGAGATGGCCCTATTCATGTTCAATTGCTTGAGTGTTGGAACTCTTACTAACAATGTTAATATGGCTGATTTAAATGATCTCCTGTGGATAATTGATCAGACTCTGAAGGAGGTCGAACAAAAAAAAACTCGGGAGATACCTAAAGAGGCAATACTAATGACCGCAACCGGAGTAGAAGCTTTGAATTGGGAGAAGGAGCCTACGGATGGTCATATCCAAAATATGACTGAAACCAACGTGAATGCCATGCAGAAACATAATTTGCTTATGGATTCAGTCAATGGTGGTTGGAATGAGATGTTTCAATTTGGTGATTTTAATCCCCAAAATGGATTTTGA 672 0.3839 MARKKVNLAYIANDSKRKESYKKRKNSLIKKTNEISTLCGIDACAIIYGQNEPQPEVWPSHLGVQRVLHKFGRMSQMEQSKKMMNQETFLKQSIIKAKEQLKKQKNENRKKEMALFMFNCLSVGTLTNNVNMADLNDLLWIIDQTLKEVEQKKTREIPKEAILMTATGVEALNWEKEPTDGHIQNMTETNVNAMQKHNLLMDSVNGGWNEMFQFGDFNPQNGF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1321 223 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lal5g1321 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal5g1321 223 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lal5g1321 223 PANTHER MADS BOX PROTEIN 2 160 - -
Lal5g1321 223 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 160 - -
Lal5g1321 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lal5g1321 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal5g1321 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal5g1321 223 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal5g1321 223 Coils Coil 87 114 - -
Lal5g1321 223 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1321 Lal-Chr5 15870170 15870841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1321 1 152 Type I MADS-box Gene Family AT5G48670 53.289 3.34e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal5g1321 SRF-TF 9.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1321 - - lang:109329409 270.396