Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1320 ATGAGCATCAAGCCCAAGGCAAAGCAGAAATCTCCATTTGTTTGTCCACCTAAGTGTTCTTCTGGAGGTAGATTTTATGGAGGAGATGATGATAATGCTTTATGTAGAGAATCATTTTGTGAAGAGGATCATGAAGATAAGAAAAGTGAAGACAATGATGAGAAAGTTGTTGCATCCTCAAGTTGCACTAGTAATAGAAGGAATGCTGAGAAACGTGGAAGAAGAGAAGGTGCTCTCAAGTTAAAGGAGAAGGGTATTATTGGTGTAGGAGAAGAAAGAAATTTGATGAATGATAGAAAGGTTTCAATGGAAATGGAAGAGTACAATAGAGAAAAAGAATATGAATCCTTAAGGAAGAGGTTTGAGAAGAAAGCACAAACAGTTTTGCAAGAGCAGCTCTTGAAATTAGAAAGAGATTCAAAGGAAGTTGAGTTTGCATCAAGTAAAGCTGTGCATAAAGATGTGTTGCAATTTGAGTCACCTAAAACAATTTGTACACCAAGAACTCATTCATTTGCCTCTAGTACTATTTCAAAATGTTCTAGACTTAGAAATATCATAGAGGATCATGTATTCGGTAGCCAGAACTTTGAGAAAATTGACAAGCCCTCTCAGAAGAAATTGAGTTATGAGTGGCTGAATTTGAAACAAACTGAGGAGTTGAAGGTTAAGACTAGAAAACAGAAGCAACCAGTTTATGTGAGCAGACAAATCCATAGAAGGAGATCAAAGCATTCCAGGGTCAGAATATATTCTCCAAGGATGACTTCTAAGGTTGAAATTTGCAAAATAAAGGCTCTAGAAGACATGAGAAAAGAAAAACTAAAGATGAAGAAGGAAAGGAAGGAGATTGTGGAGGAGACACAAGGAATAGACACTTTTGCTGTGATTAAATGTTCATCTGATCCAAAGAAAGATTTCAGGGATTCAATGATTGAGATGATCACAGAGAAACATATTAGCCAGCCAGAAGAAATGGAAGAGTTATTGGCATGTTATCTAACTTTGAATTCTGATGAGTATCATGACTTAATTATCAAAGTGTTCCGGCAGTTATGGTTCCACATGAGCCAAGATGGTTTAGATATTAAATCAGACATGCAAACGACCCTTGTTGACTGGTATGATCGAAAAACAAATTCCCTTATGTTTACGATTGTGAGAGGAAGGAGATCAAGACACATCGCGGGATGA 1194 0.3685 MSIKPKAKQKSPFVCPPKCSSGGRFYGGDDDNALCRESFCEEDHEDKKSEDNDEKVVASSSCTSNRRNAEKRGRREGALKLKEKGIIGVGEERNLMNDRKVSMEMEEYNREKEYESLRKRFEKKAQTVLQEQLLKLERDSKEVEFASSKAVHKDVLQFESPKTICTPRTHSFASSTISKCSRLRNIIEDHVFGSQNFEKIDKPSQKKLSYEWLNLKQTEELKVKTRKQKQPVYVSRQIHRRRSKHSRVRIYSPRMTSKVEICKIKALEDMRKEKLKMKKERKEIVEETQGIDTFAVIKCSSDPKKDFRDSMIEMITEKHISQPEEMEELLACYLTLNSDEYHDLIIKVFRQLWFHMSQDGLDIKSDMQTTLVDWYDRKTNSLMFTIVRGRRSRHIAG 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1320 397 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 59 368 IPR038933 GO:0045892
Lal5g1320 397 Pfam Transcriptional repressor, ovate 300 356 IPR006458 -
Lal5g1320 397 ProSiteProfiles OVATE domain profile. 296 355 IPR006458 -
Lal5g1320 397 Coils Coil 267 287 - -
Lal5g1320 397 MobiDBLite consensus disorder prediction 43 76 - -
Lal5g1320 397 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 295 357 IPR006458 -
Lal5g1320 397 PANTHER TRANSCRIPTION REPRESSOR OFP4 59 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1320 Lal-Chr5 15859582 15862999 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lal5g1320 Ovate 7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1320 - - gmx:102670537 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1320 5 15859582 15862999 Lal5g1320 5 15859582 15862999 ECH
Lal19g0778 19 11928435 11929493 Lal5g1320 5 15859582 15862999 PCT
Lal5g1320 5 15859582 15862999 Lal19g0778 19 11928435 11929493 PCT