Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1319 ATGGCTTCAGGGGCTATATTCTCGTCGCTGCGGCGGAGAAGGTCGCCGTCATTGGAAGCCTTTCTTGCGCCGGTTGATTTGTTTGACGTTGCACTCGTTAAAACCCTAGTTTCTGTGGTTAACGAACTTGTCTCGTGCTTTTCAAATCGCGTGTTCCAATTCCAGCGCAAGAATTCTCGGTCTTTGATTCGAAAAGTTGAAGTTTTTCAGATTCTTTTGGAGTATTTAAGTGATTCAATTGTTTTTCTTCCACCTACCGCCGTTCTTTGTCTCAAGGAGCTTTATCTTGTGCTCTACCGGTCTAAGATTCTTCTTGATTATTGCGTTCAATCGAGTAAGTTGTGGCTTTTGCTTCAGAATCATTCAATTTCTGGCCATTTCCATGATTTGAACCAAGAAATTTCGACCCTTTTGGATGTTTTTCCTACTAAAGATGTTGAATTGAGTATGGATGTTAGGGAGCAAATTGAGTTGTTACAGAAACAGTTACGGAAGGCGAAGTTGTTTATAGATAAGAAAGATGATGCTCTCAGGATTCGGTTCTTTTCATTTCTTGATGAGTTTGAGAGTGGGAAGATTCCTGATTCTGATGAATTGAAATGCTTTTTTGTTGAGAAATTGCAGATTTTTGATGCTAGGAGTTGTAGGACTGAAATCGAGGCTTTGGAGGAGCAGATTGTTAATCATGAGGGTGACGTTGAGCCTACAATTTCTGTGCTTAATGGTTTGGTTGCGATGACGCGGTATTGTAGGTTTTTGCTTTTTGGATTTGAGGAGGATGAGCTTCGTTTGAAAAATGGAAGTCAGATGAAGATTAAAAACAGACTGATTACTAAAGCAATTGCTGAAACATTTTTAACTGTTCCGAAGGACTTTTGTTGCTCGATATCATTGGATTTGATGTGTGACCCGGTGATAATTTCTACAGGGCAAACTTATGAGAGAAGTTCAATTTCCAGGTGGGTGGAAGACGGGCACACAACTTGCCCAAAAACAGGGCAAATGCTTGGCCACAATCGTCTTGTTCCTAATCGTGCTCTAAGGAATTTGATCATGCAGTGGTGCATTGCACATGGAATTCCCCATGAACCACCCGAGGTCATTGATGCTATGGCTGAGAGTTTTGCATCAGCTTGTCTCACCAAAGCTGCTGTCGAAGCCAACAGAGCCACATCGGCCCTTCTCATTCAGCAGCTTGCTAATGGATCACAAGCTGGGCAGACTGTTGCTGCTCGGGAGATACGATTGATGGCAAAAACTGGAAAACAAAACCGTGCTTTAATTGCAGAAGCAGGGGCAATTCCTTATCTTCGGAACTTGCTTTTGTCACCCAACCATGTTGCTCAGGAGAATTCTGTGACTGCACTGCTCAACCTATCCATTTTTGACAAGAACAAAAGTCGGATCATGGATGAAAAAGGGTGTCTGCGATCAATTGTTGATGTGCTGAGATTTGGGCACACAACCGAGGCAAGGGAAAATGCTGCTGCGACATTGTTTAGCCTATCTGCTGTGCACAACTATAAGAAGAGAATCGCAGATAAGATGGGAGCTGTCGAAGCCCTGGCAGGGTTGTTGCAAGAGGGGACTCCTAGAGGAAAGAAGGATGCTGTAACAGCTTTGTTTAATCTATGTACTCACACTGAGAATTGTGTTAGAATGATAGAGGCAGGTGCGTTAACAGCTCTAATCGGTGCTTTAGGGAATGAAGGAGTTGCCGAGGAAGCAGCAGGTGCCTTGGCCTTGATTGTTCGCCAGCCTGTTGGGGCCAAAGCAGTGGTGAAGGACGAAGGAACAATAGCTGGCTTGATGGGAATGATGCGTTGTGGAACGGCAAGAGGTAAAGAGAACGCAGTTGCAGCATTGCTGGAGTTGTGCCGGAGTGGAGGTGCAGCCGCAACTGAAAGGGTTGTTAAGGCACCGGCTTTGGCTGGATTACTTCAAACCCTTCTTTTGACAGGGACAAAGCGAGCAAGGCGAAAAGCAGCATCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGTCGGATTAGGCGTTGGCTATGCATTTGCTAACAATTCAGCTCCAACTAGGGATACAAGTTTTACTGGTGATGTTTCAGTACCAATGCCTATTTCTGTTCCTGTTTTATAG 2148 0.4413 MASGAIFSSLRRRRSPSLEAFLAPVDLFDVALVKTLVSVVNELVSCFSNRVFQFQRKNSRSLIRKVEVFQILLEYLSDSIVFLPPTAVLCLKELYLVLYRSKILLDYCVQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPTKDVELSMDVREQIELLQKQLRKAKLFIDKKDDALRIRFFSFLDEFESGKIPDSDELKCFFVEKLQIFDARSCRTEIEALEEQIVNHEGDVEPTISVLNGLVAMTRYCRFLLFGFEEDELRLKNGSQMKIKNRLITKAIAETFLTVPKDFCCSISLDLMCDPVIISTGQTYERSSISRWVEDGHTTCPKTGQMLGHNRLVPNRALRNLIMQWCIAHGIPHEPPEVIDAMAESFASACLTKAAVEANRATSALLIQQLANGSQAGQTVAAREIRLMAKTGKQNRALIAEAGAIPYLRNLLLSPNHVAQENSVTALLNLSIFDKNKSRIMDEKGCLRSIVDVLRFGHTTEARENAAATLFSLSAVHNYKKRIADKMGAVEALAGLLQEGTPRGKKDAVTALFNLCTHTENCVRMIEAGALTALIGALGNEGVAEEAAGALALIVRQPVGAKAVVKDEGTIAGLMGMMRCGTARGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLLTGTKRARRKAASLARVFQRCENASLHYVGLGVGYAFANNSAPTRDTSFTGDVSVPMPISVPVL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1319 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 695 - -
Lal5g1319 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 361 IPR013083 -
Lal5g1319 715 SMART arm_5 506 546 IPR000225 GO:0005515
Lal5g1319 715 SMART arm_5 421 461 IPR000225 GO:0005515
Lal5g1319 715 SMART arm_5 462 504 IPR000225 GO:0005515
Lal5g1319 715 SMART arm_5 547 585 IPR000225 GO:0005515
Lal5g1319 715 SMART arm_5 587 627 IPR000225 GO:0005515
Lal5g1319 715 Gene3D - 392 667 IPR011989 -
Lal5g1319 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Lal5g1319 715 PANTHER U BOX DOMAIN-CONTAINING 11 695 - -
Lal5g1319 715 Pfam Armadillo/beta-catenin-like repeat 423 460 IPR000225 GO:0005515
Lal5g1319 715 Coils Coil 212 232 - -
Lal5g1319 715 SUPERFAMILY RING/U-box 279 361 - -
Lal5g1319 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Lal5g1319 715 CDD RING-Ubox_PUB 292 334 IPR045210 -
Lal5g1319 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Lal5g1319 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Lal5g1319 715 Gene3D - 29 144 IPR036537 GO:0007166
Lal5g1319 715 SUPERFAMILY ARM repeat 394 670 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1319 Lal-Chr5 15847514 15849661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1319 1 715 U-box Gene Family AT1G29340 68.844 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1319 - - gmx:100811153 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1319 5 15847514 15849661 Lal5g1319 5 15847514 15849661 ECH
Lal5g1319 5 15847514 15849661 Lal3g0401 3 2771052 2774243 LSH
Lal14g1225 14 14148317 14150473 Lal5g1319 5 15847514 15849661 PCT
Lal5g1319 5 15847514 15849661 Lal14g1225 14 14148317 14150473 PCT