Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1318 ATGACTAGGGCTGTCCGCAATAGGGTATTCAAGGATGCCAATGGTGACATTAGTGACCATATCCGCAACCATATCCATTTAACAAATTGCATTCACTTGAAGAACCATATGCACAAGAACAGTCCCATACTTGCTGATAGGACACTCATGAAGGACCTTGTTGTGCTGCAGAGGTCGCGCTCTCTTAGGGACCCTTCCGCGAGTCCTCCATCATGGCATTCACCTTCAGTAGTTGATTTGCTTTTTAAGAGCGCTGAAAATGATGCCGCGGTTCAAGAGGGAAGAAGGTCTGTAGGTGTTGAGCGTAGGAAGGGAGGGAGAAGGTTGTCCAGAAATTCACCACCCTTGGCGAGTATAGGTACATCAAGGGTTGCTCCAGGTGAGGCTAGTGTTGGTAATGATGGGGTACCCGCAACTAGTGAACGTAGTAGCAAGAGTGGAGTCGGGAATGGGAGGAGGGTTGCGAGAGAAGAGTCGGGTAGGAAGAGTGATAGGCCTGATTATTTTGATGTTAGTCAAGCTAGCAAAAGTTTGGCTGAAGATGTTATTTCAAGGTACTCTGCATCGAGCAAACAGAGGGGGAAGAATGTTCAAGCAAAGACACTTTCTGAGCAGTTGAATGATTTTCCATTGGAAAGTGATGATTTGGCATCATCAAACATGCATTTTCGTGGAAAGTTTCCGAGACAGGAGAAAATTACTGAGGAGGCAGAAACCAACATCCGTGGTCATGGATGTGGAGTGAATAGGGGTAAGAGGCGAAAATTTCGAAGCACAAGAAGAACTCGAGTTGCTACAGCATCGAGAGATATTGGAGCCGAGAATGAATTGTCTGTGGCTTCCAACTCATTGCCTAATGGTTCAGCTCACCAGAAATATCACATGGAGAAGGCTGATGACTGCATAGATCAAAATGTTACTCGGGCTCCAAAAAATGGGTGTGGTATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAATCATTCCTTGATACAGCAGGAAGAAGTTTGACATCTTGTGGTTTATCTGACCCGAGGTTAAAGAAAGGGACATCGACCACCAGTGGAAAAAATGTTCCGGAGCGACCTGTGGCATCTGAGTACTCAAGCTCATCTACTAACTCTGATGCAGAAGCATTGCCTTTACTAATTGAAGGATCTAGATCTCATGGAAGCACTGAAAATGTTTGTTGGGACCATGACTATTCTGGGGAGCTAGCTCTTTTTGGTAATAATTTATTCAAGCATGATATTGATTCCGACCTTGCCTCTGAAGCTAGATCCGGTGACCAGTATAAGTTAAGAGGGGATAGTCATAGTAGACATCAAAGCTTAACACAAAAATATATGCCACGAACCTTCAGAGATATGGTTGGACAAAATTTAGTGGCACAAGCTCTTTCAAATGCAGTGATGAGAAGGAGAGTTGGACTGTTGTATGTGTTTTATGGTCCCCATGGCACCGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTTTGAATTGTAGTTCTTCAGAACACCCAAAACCCTGTGGCTTTTGCAACTATTGCATTGCACATGACATGGGTAAGAGTAGAAATATAAGGGAAGTTGGTGCGGTCAGCAATTTTGACTTTGAGGGCATCATGGATCTACTTGACAATGTAACCGTTTCCCAGCAACCATCGCAGTACAGAGTATTTATTTTTGATGAATGTGATACTCTGTCGGATGATTGTTGGAATGTTATATCAAAGGTCATTGATCGAGCACCAAGACGTCTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCGAAGCTGAAGGACGCAGATATTATATATACATTGCAGTGGGTTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCCTAAAACTCATTGCCTCAAGATCAGATGGGTCATTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTTGTTCAAGAACTGGTAGGGCTTATCTCTGATGAGAAATTGGTTGATCTGCTTGATTTAGCATTATCTGCAGACACAGTCAACACTGTGAAAAATTTGAGAGTGATCATGGAAAGTGGTGTTGAGCCATTAACTTTAATGCCACAACTTGCTACAGTTATTACTGATATACTTGCTGGGACCTATGATTTCACAAAAGAAAAACGAAGACGGAAGTTTTTCAAGAGACAGCCATTGTCCAAAGAAGACATGGAAAAGCTTCGCCAAGCTTTGAAAACTTTATCCGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACAGCTGCATTGCTTCAACTTGCTCCGGACCAGCAATATTTGTTGCCTACTTCATCCGATAATAGTTTCAACCATAGTCCCTTGGCTATAAACAATGGTCATGTGAAAGAAGCAGCTAGAATAACTGGTAATCCTGTTGAAGCAAGACGGTTATCAATGGGTGATAGAATAGAAAATTTCCATGCTGAAAGCTCAGGTAATGGTGTGACAAAGGGTGTAAGTTCGGAGAAAAGAAGACATAGTGTGTCTGGTGTTGCTCCTCAACATACTTATTCACGTACCACCAATAATACTAGGATGAATGAAAGGCAGATTTTAGGTAAAAACCATAAAGAAGTTGAAGAGATATGGTTAGAGGTGCTTGAGAAGATTCAAATTACTGGTCTGAAAGAGTTTCTGTACACAGAAGGCAAGCTGATCTCAGTTAGTTTTGGGGCAGCTCCAACTGTACATCTAATGTTTAGTTCTCAGCTGACCAAATCTACTGCCGAGAAGTTCACAGGTCACATCTTACAAGCATTTGAATCTGTCCTTAGATTGTCCATAACGATAGAAATTAGATGTGAGACAAATAAAGATGTGTGCGCGGTTCAACAGTCTCCTATATTGCCTGGTATTAACAATAATTCGCCTCAGATTAGAGACTCAAACAATGTTGCCATTCAAGGTCATCCTTCAGTGACTGGTTCTGTTGAAAAGGGACGGGGTGAAATTGTAGAAGAAGCAGCTTCTCCAATGCAGTACAAAAATAATGCCCAGCAGGGTAATAATGCTCACGCAGCATCTTATAGAAGTCCTGGACAAGCATCGGGTTCCCTAAAGGAGTCAATTGTTAAGTCGCATTTAGACCGAAGGAAGCTTAAGGAACAAGGCCAAAGTCGAAGTCTTGTAAGAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGTCAGAGAAATGGGTGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAATCTGTATGAGACTGGAACCAAAATCAAGGAGCTTACTATGCTGGAAAGCATCAAGAGCAACTCGTCGAAAGCTATTGCGCTTGAAAATTCGAGCTCGAAAACCATGCGCGTTGTTGAAGCTTGTCTCGTGCGGAAAATGTCTGTCTACAAAATCTCCAAGGTAGTAGTAGTTTCGAGAATCTTCGAAGGGTTCGTTTAA 3552 0.4243 MTRAVRNRVFKDANGDISDHIRNHIHLTNCIHLKNHMHKNSPILADRTLMKDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKSAENDAAVQEGRRSVGVERRKGGRRLSRNSPPLASIGTSRVAPGEASVGNDGVPATSERSSKSGVGNGRRVAREESGRKSDRPDYFDVSQASKSLAEDVISRYSASSKQRGKNVQAKTLSEQLNDFPLESDDLASSNMHFRGKFPRQEKITEEAETNIRGHGCGVNRGKRRKFRSTRRTRVATASRDIGAENELSVASNSLPNGSAHQKYHMEKADDCIDQNVTRAPKNGCGIPWNWSRIHHRGKSFLDTAGRSLTSCGLSDPRLKKGTSTTSGKNVPERPVASEYSSSSTNSDAEALPLLIEGSRSHGSTENVCWDHDYSGELALFGNNLFKHDIDSDLASEARSGDQYKLRGDSHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVMRRRVGLLYVFYGPHGTGKTSCARIFARALNCSSSEHPKPCGFCNYCIAHDMGKSRNIREVGAVSNFDFEGIMDLLDNVTVSQQPSQYRVFIFDECDTLSDDCWNVISKVIDRAPRRLVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWVATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMESGVEPLTLMPQLATVITDILAGTYDFTKEKRRRKFFKRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPTSSDNSFNHSPLAINNGHVKEAARITGNPVEARRLSMGDRIENFHAESSGNGVTKGVSSEKRRHSVSGVAPQHTYSRTTNNTRMNERQILGKNHKEVEEIWLEVLEKIQITGLKEFLYTEGKLISVSFGAAPTVHLMFSSQLTKSTAEKFTGHILQAFESVLRLSITIEIRCETNKDVCAVQQSPILPGINNNSPQIRDSNNVAIQGHPSVTGSVEKGRGEIVEEAASPMQYKNNAQQGNNAHAASYRSPGQASGSLKESIVKSHLDRRKLKEQGQSRSLVRSKVSLAHVIQQAEGQRNGWSKRKAVSIAEKLEQENLYETGTKIKELTMLESIKSNSSKAIALENSSSKTMRVVEACLVRKMSVYKISKVVVVSRIFEGFV 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1318 1183 CDD HLD_clamp_pol_III_gamma_tau 618 681 IPR045085 -
Lal5g1318 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 665 IPR027417 -
Lal5g1318 1183 MobiDBLite consensus disorder prediction 151 169 - -
Lal5g1318 1183 Pfam DNA polymerase III, delta subunit 461 618 - -
Lal5g1318 1183 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 444 792 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lal5g1318 1183 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 168 1120 - -
Lal5g1318 1183 MobiDBLite consensus disorder prediction 1037 1060 - -
Lal5g1318 1183 Gene3D - 436 615 IPR027417 -
Lal5g1318 1183 PANTHER PROTEIN STICHEL-LIKE 3 168 1120 - -
Lal5g1318 1183 SMART AAA_5 477 618 IPR003593 -
Lal5g1318 1183 CDD AAA 459 618 - -
Lal5g1318 1183 MobiDBLite consensus disorder prediction 846 877 - -
Lal5g1318 1183 Coils Coil 754 781 - -
Lal5g1318 1183 SUPERFAMILY post-AAA+ oligomerization domain-like 689 792 IPR008921 GO:0003677|GO:0006260
Lal5g1318 1183 MobiDBLite consensus disorder prediction 91 172 - -
Lal5g1318 1183 MobiDBLite consensus disorder prediction 342 374 - -
Lal5g1318 1183 Gene3D - 619 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1318 Lal-Chr5 15835591 15841358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1318 444 742 Core DNA Replication Machinery Family AT1G21690 24.183 7.41e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1318 - - gmx:100809005 1751.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1318 5 15835591 15841358 Lal5g1318 5 15835591 15841358 ECH
Lal5g1318 5 15835591 15841358 Lal3g0402 3 2778188 2784354 LSH