Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1308 ATGAAACTGAAATGCAATTTCCAAAACCCTAGCAATAGTATACATACCTCATTGTGGTGGCTGCGCTTCGTTCCTTCCTTCCTTCCTCAACCCAACGCCATGGCATCAGAGAAGAAGCTATCGAACCCAATGAGGGAGATCAAGGTTCAGAAGCTGGTCCTCAACATCTCCGTTGGTGAGAGCGGCGATCGTCTCACCAGAGCCGCCAAGGTCTTGGAACAATTGAGTGGTCAAACCCCTGTTTTCTCCAAGGCTCGATATACCGTGCGATCATTCGGAATTAGGCGTAACGAAAAGATTGCTTGCTATGTCACTGTCAGGGGTGATAAGGCAATGCAGCTTCTTGAGAGTGGGCTGAAGGTCAAGGAGTATGAACTCTTGAGGAGGAATTTCAGTGACACTGGTTGTTTTGGATTTGGTATTCAGGAGCATATTGATCTTGGAATCAAGTATGATCCTTCAACCGGTATCTATGGGATGGATTTCTATGTAGTTTTAGAACGCCCTGGATACCGTGTTGGTCGGCGCAGAAGATGCAAAGCTCGGGTTGGAATTCAGCACAGGGTGACCAAAGAAGATTCAATGAAGTGGTTCCAAGTTAAATATGAAGGAGTCATTCTCAACAAGTCCCAACAAATTTCTTAA 645 0.4574 MKLKCNFQNPSNSIHTSLWWLRFVPSFLPQPNAMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKARVGIQHRVTKEDSMKWFQVKYEGVILNKSQQIS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1308 214 Gene3D - 34 210 IPR022803 -
Lal5g1308 214 Pfam ribosomal L5P family C-terminus 99 197 IPR031309 -
Lal5g1308 214 ProSitePatterns Ribosomal protein L5 signature. 72 88 IPR020929 GO:0003735|GO:0005840|GO:0006412
Lal5g1308 214 PANTHER 60S RIBOSOMAL PROTEIN L11-1 21 213 - -
Lal5g1308 214 Pfam Ribosomal protein L5 42 95 IPR031310 -
Lal5g1308 214 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 21 213 IPR002132 GO:0003735|GO:0005840|GO:0006412
Lal5g1308 214 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 27 205 IPR002132 GO:0003735|GO:0005840|GO:0006412
Lal5g1308 214 SUPERFAMILY RL5-like 41 206 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1308 Lal-Chr5 15764399 15780374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1308 34 214 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 95.580 2.27e-129 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1308 K02868 - han:110912325 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1308 5 15764399 15780374 Lal5g1308 5 15764399 15780374 ECH
Lal5g1308 5 15764399 15780374 Lal3g0410 3 2850547 2852470 ECH