Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1307 ATGGAAGGTTTCAAAGTTGTTTTTTGGCTCATCTTTTTGTTTTTGTGCAATTTGGTTGTTGAGTGCAGTGACAGCCTTCTATCTCCAAAGGGTGTTAACTATGAAGTGGCTGCTTTGATGTCAATGAAGAGAGAGATGAATGATGAGTTGCATGTTATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGGCCATGGTTGGTTGTTCTGCTGAGGGTTATGTCATTTCACTGGAAATGGCCAGTGCAAGTTTATCTGGAACGCTTTGTCCAGGAATTGGAAATTTGAGTCACCTTCAAACATTGTTATTGCAGAACAATAAGTTATCTGGTCCTATCCCTGCTGAGATAGGAAAACTTTTAGAGCTACGGACCCTTGACCTTTCTGGTAACCAGCTTGGTGGTGAAATTCCTAGCTCTTTGGGTTTTTTGACTCATCTAAGTTACTTGCGGCTTAGCAGAAATAAACTATCTGGACAGATCCCTGAACTTGTTGCTAATCTCACTGGCCTTTCATTCTTGGACTTGTCATTCAACAATCTCAGTGGACACTCTCCAAAAATTCTAGCAAAAGGAAACAATTTCCTCTGCACATCTTCACAAGGTTGTATGACTGTTTCGGAATCATTAAATGATACGGGGGCATCTCAGAAAGTCAGTAGCCATCACCGGAAGAGGTTCTCCTTCCGTGAATTGCAAAGCGCTACTGCAAATTTCAGTCCAAAAAATATCGTAGGACAAGGTGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCAAACAAAATGTTGGTGGCCGTGAAGAGGCTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAGATGATTGGTATGGCTGTGCATCGGAATCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTTGTTTATCCGTTCATGCCCAATGGCAGTGTTGCTGATCGGTTGAGAGAAACATGTCGGGAAAAGCCATCTTTAGACTGGAACAGGCGAATGCATGTTGCTCTTGGGGCTGCTCGTGGTCTTCTGTATTTGCACGAACAGTGCAGCCCGAAAATAATCCACAGGGATGTTAAGGCAGCAAACATTTTGCTAGACGAAAGTTTTGAAGCTGTGGTTGGTGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACCACTGCAGTGCGGGGTACTGTAGGGCACATTGCCCCGGAGTATCTCTCAACTGGACAGTCTTCCGAAAAAACAGATGTTTTTGGATTCGGCATATTACTTTTGGAGCTCATAACAGGACAAAAGGCACTGGGTACTGGAAATGGTCAGGTCCAAAAGGGAATGATTCTTGACTTGGTTAGAACATTATCCGAGGAGAAGCGGCTCGAAGCGTTAGTTGATAGGGATCTAAAGGGGTGTTTTGATCCAGTAGAATTAGAAAAGGCAGCAGAATTGTCATTACAGTGTACTCAGTCACTTCCTAGTCTGCGGCCGAAAATGTCAGAAGTCTTGAAGATTCTAGAAAGCCTAGTTGGACAATCATTGAGGCCAGATGAGTCACAAGGGGGAGGTAACCTTTATGATGAAAGGACTTGCAGTTTCTCTCAAAACTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCAATTGAACTTTCTGGACCTAGGTGA 1695 0.4283 MEGFKVVFWLIFLFLCNLVVECSDSLLSPKGVNYEVAALMSMKREMNDELHVMDGWDINSVDPCTWAMVGCSAEGYVISLEMASASLSGTLCPGIGNLSHLQTLLLQNNKLSGPIPAEIGKLLELRTLDLSGNQLGGEIPSSLGFLTHLSYLRLSRNKLSGQIPELVANLTGLSFLDLSFNNLSGHSPKILAKGNNFLCTSSQGCMTVSESLNDTGASQKVSSHHRKRFSFRELQSATANFSPKNIVGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGMAVHRNLLRLYGFCMTPDERLLVYPFMPNGSVADRLRETCREKPSLDWNRRMHVALGAARGLLYLHEQCSPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALGTGNGQVQKGMILDLVRTLSEEKRLEALVDRDLKGCFDPVELEKAAELSLQCTQSLPSLRPKMSEVLKILESLVGQSLRPDESQGGGNLYDERTCSFSQNYSDVHEEPSFIIEAIELSGPR 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1307 564 Gene3D Ribonuclease Inhibitor 32 206 IPR032675 -
Lal5g1307 564 SUPERFAMILY Protein kinase-like (PK-like) 221 513 IPR011009 -
Lal5g1307 564 SMART LRR_typ_2 98 121 IPR003591 -
Lal5g1307 564 SMART LRR_typ_2 122 146 IPR003591 -
Lal5g1307 564 SMART LRR_typ_2 170 193 IPR003591 -
Lal5g1307 564 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Lal5g1307 564 Pfam Protein kinase domain 244 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1307 564 SMART serkin_6 241 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1307 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 226 - -
Lal5g1307 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 225 564 - -
Lal5g1307 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 363 375 IPR008271 GO:0004672|GO:0006468
Lal5g1307 564 Gene3D Transferase(Phosphotransferase) domain 1 317 521 - -
Lal5g1307 564 Pfam Leucine Rich Repeat 125 146 IPR001611 GO:0005515
Lal5g1307 564 ProSiteProfiles Protein kinase domain profile. 241 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1307 564 Gene3D Phosphorylase Kinase; domain 1 212 316 - -
Lal5g1307 564 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 225 564 - -
Lal5g1307 564 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 226 - -
Lal5g1307 564 SUPERFAMILY L domain-like 34 197 - -
Lal5g1307 564 ProSitePatterns Protein kinases ATP-binding region signature. 247 269 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1307 Lal-Chr5 15757467 15762674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1307 40 564 Receptor kinase-like Gene Family AT5G45780 66.034 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lal5g1307 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1307 - - gmx:100810610 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1307 5 15757467 15762674 Lal5g1307 5 15757467 15762674 ECH