Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1296 ATGCCGGAGTTCCCCGATTCCCTTACGCCTCCGGCCACCAACTCTCGCCCTTTCCCCGTTCGAGAGGACTGCTGGACTGAGGAAGCCTCCTCCACCCTCGTCGACGCCTGGGGCCGCCGCTACCTCGAGCTCAACCGTGGCAACCTCCGCCAAAAGGACTGGCAAGACGTTGCTGATGCCGTTAATGCCCTACACGCTCACTCTAAGAAAACACACCGCACCGATGTTCAGTGCAAGAACCGCATCGACACCATCAAGAAGAAATATAAGATCGAGAAAGCTAGGGTTGCGTCTTCAAACGGCGCCGTTTCGTCTTCTTGGCCTTTCTTCGAACGATTAGATGCTTTGATTGGCCCTAACTTCATTGCTAAAAAATCAACCTCTTCCCCATCGCCGTCTCCTCCGGTGGCTCTCCCTCTCTTGCCGTATCGTAAAACTCAATCCCCTGTGGCTGCGCCGTTTACCGCTGTCGCGCTGCCGCAGAAGCGGTCCGCGTCGGCAGTTATAGATGATGGTTACTTTAGGAGGAATTATTCGGCGATGGCGGCCGCTGCTGCTGCTTCTGAAGCTTATGAAGATGATGAGGAAGAAGATGATGATGGTGAGGAAGATGAAGATGAGGAGATTATGGAAGATGAAGGAAGAGACAGTGAAGTGGAGGAAGGAGGGAGGGATAAGGGAAAAGAAGGAATGAGAAGGTTGGCAAAGGCGATAGAGAAGTTCGGGGAAGTGTTTGAAAAAGTGGAAGGACAGAAACTAAGGCAGATGGTGGATTTGGAGAAACAGAGGATGCAATTTGCTAAAGATGTTGAAGTGCAGAGGATGCAGATGTTCATGGACACACAAGTTCAGTTGGAGAGGATTAAGCGCGGGAAGAGATCTGGTTCTGATGTAATATGGAAGTGCACGGGTAGGACTGAGTTATCCAAGGAAGGAACTGTACAGTTAAGTGATTTACTTTCATATCGTTGCATGGAACAACTGTTTGTATGTGTCTTTCCTCAGGAAACAGTTTTGGAGAAGCATCTTGGTTGGACAAATTCAAATACAGAGAGATGA 1059 0.4967 MPEFPDSLTPPATNSRPFPVREDCWTEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVASSNGAVSSSWPFFERLDALIGPNFIAKKSTSSPSPSPPVALPLLPYRKTQSPVAAPFTAVALPQKRSASAVIDDGYFRRNYSAMAAAAAASEAYEDDEEEDDDGEEDEDEEIMEDEGRDSEVEEGGRDKGKEGMRRLAKAIEKFGEVFEKVEGQKLRQMVDLEKQRMQFAKDVEVQRMQMFMDTQVQLERIKRGKRSGSDVIWKCTGRTELSKEGTVQLSDLLSYRCMEQLFVCVFPQETVLEKHLGWTNSNTER 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1296 352 PANTHER OS05G0560600 PROTEIN 9 297 - -
Lal5g1296 352 MobiDBLite consensus disorder prediction 185 230 - -
Lal5g1296 352 Pfam Myb/SANT-like DNA-binding domain 22 116 IPR044822 -
Lal5g1296 352 Gene3D - 25 91 - -
Lal5g1296 352 MobiDBLite consensus disorder prediction 189 216 - -
Lal5g1296 352 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 9 297 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1296 Lal-Chr5 15655919 15663564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1296 21 296 Trihelix Transcription Factor Family AT3G14180 30.409 1.57e-40 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lal5g1296 Myb_DNA-bind_4 6e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1296 - - gmx:100785349 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1296 5 15655919 15663564 Lal5g1296 5 15655919 15663564 ECH
Lal5g1296 5 15655919 15663564 Lal3g0421 3 2913789 2916038 ECH
Lal5g1296 5 15655919 15663564 Lal3g0421 3 2913789 2916038 LSH
Lal5g1296 5 15655919 15663564 Lal11g0554 11 4455670 4462466 LSH