Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1292 ATGACAGGAAAGAAGCTTAACCTAGGATACATAGCTAGTGACTCAAAGAGGAATACAACATACAAGAAGAGAAAAAGTGGTCTAATCAAGAAGATTGATGAGATTAGTACCCTTTGTGGGATTGAAGCTTGTGCTATAATATATAATTCAAATGAACCTCAGCCAGAGGTGTGGCCATCCCATTTGGGTGCCCAAAGGGTTCTCTACAAGTTTAGTAGAGTGCCTCAAATGGTACAAAGCAAGAAGATGTTCAATCAAGAAAGTTTCTTGAGCCAAACCATCATGAAAGCCCAAGAGAAGTTAAAGAAATTGAGGAATGAGAATAGGAAGAAGGAGATGGATCTTCTAATGTATCAATGTTTGAGTAGTGGGAGCCTTGTTAACAATGTTAACATTGCAAATTTGAATGATCTTTCATGGAGGATTGATCAAACCGTGAAAGAGATTGAAAGAAATGTCAATAAGGGACAACCCCAAGAAAGGTCTCCAATGGTTTCAAATAGAGGAGAAGTTATCAATGAAGAGAATGAGAATGTAGCTGTGATCGATCGTAGTTTCCAAGAGATGATGCAAAACAACATAGATGCTATACAAAACAGAAATTGGTGTGTTGATTCGGCCAATGGTGGTGGAAATGAGATGCTTCGATTTGGAGCATTGAACCATTCAAATGGTGGTATTTGGAATGATATTTTTCTCACTTAG 705 0.3787 MTGKKLNLGYIASDSKRNTTYKKRKSGLIKKIDEISTLCGIEACAIIYNSNEPQPEVWPSHLGAQRVLYKFSRVPQMVQSKKMFNQESFLSQTIMKAQEKLKKLRNENRKKEMDLLMYQCLSSGSLVNNVNIANLNDLSWRIDQTVKEIERNVNKGQPQERSPMVSNRGEVINEENENVAVIDRSFQEMMQNNIDAIQNRNWCVDSANGGGNEMLRFGALNHSNGGIWNDIFLT 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1292 234 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Lal5g1292 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal5g1292 234 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lal5g1292 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal5g1292 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal5g1292 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal5g1292 234 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 167 - -
Lal5g1292 234 PANTHER MADS BOX PROTEIN 2 167 - -
Lal5g1292 234 Coils Coil 87 114 - -
Lal5g1292 234 Gene3D - 14 119 IPR036879 GO:0003677|GO:0046983
Lal5g1292 234 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal5g1292 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1292 Lal-Chr5 15619269 15619973 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1292 1 153 Type I MADS-box Gene Family AT5G48670 50.327 5.56e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal5g1292 SRF-TF 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1292 - - lang:109329409 391.734