Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1284 ATGGCTGGTTCTGTAGTAGAAAATGGCCAGGCTCAGAAGAAGAAGTATGTCATTCTCGGCGTATCTTCGATGCTTCTTGTTGCTATGGTTGGTGCAGTTGCCATTGGTTTAACGCCAAGTGGAAGCTCGGATCACGGCGCTGCAGAGATTTCGAGCTCTCAGAAGAATGCAGAGGTGCTCTGCCAATCAACAGAATACAAAAATACTTGCATCAAAAGCCTCGATAAGGCGTCAAACACCACCGATGTGAAAGCGCTTGTGAAAATGGCTTTCAATTCCACAGCTAAGGAATTGTTAAGAAAAATGCATAACTCTACACTTTTCAAAGAGTTGGCTAAGGACAACATGACCAAACAGGCCTTGGATATATGCAAGGAAGTGTTTGGTTATGCAATTGATGACATTCATAAATCAATTAACTCATTGGATAGTTTGGAACTCAGCAAGTTAAGCCAATATGCCTATGACCTTAAGGTTTGGCTTGCAGGCACACTCTCACACCAACAAACTTGCTTGGATGGTTTCGAGAACTCGAAAACACAAGCCGGTGAGACAATGAAAAATGCTTTAAACTCCTCAATGGAGCTAAGTAGCAATGCTGTTGATCTCATAAATACTGCCTCTGCACTCCTCAAGGGTCTCAACTTGAACTATTCAGAGCTAAGTAGTGCAATTGCTGGAAGGAGGCTTCTCACTGAGGAAGAACAACAAGAACAACTTGTTGATGGTTTCCCTTCATGGGTGAGTGATGGTCAACGGCGTCTACTTCAGGCTGCACCCGGTGGCGTCGCCATTAAGGCTAACGCGGTCGTGGCTCAAGACGGGAGTGGACAGTTCAAAACACTCACTGATGCTCTTAAGACTGTTCCTAAGAAGAATGCAGTGCCTTTTGTGATTCATGTCAAGGAGGGTGTGTACAATGAGTATGTTATATTGACCAAGTTTATGACCAATGTCACAATCATTGGAGATGGTCCTACAAAGACCATATTCACTGGCAGCAAAAACTACAAGGATGGTTTCCAAACTTACAACACTGCAACCTTTGGTGTTAATGCTGCTAACTTCATTGCTAAGGATATCGGGTTCGAGAACACAGCAGGATCAGAGAAACACCAAGCTGTGGCACTCAGGGTAACAGCTGACCAAGCAGTGTTCCACAACTGCAAAATGGATGGGTTCCAAGACACTCTCTATGTCCAATCGAAACGCCAATTCTACCGTGACTGCACCATCTCAGGCACAATCGACTTCATCTTCGGGGACGCGGTCGCAGTGTTCCAAAACTGCAAGCTAGTGGTAAGAAAACCCTTAGAGGACCAAAATTGCATGGTCACAGCAGGGGGAAGGATCAAGCTTGAAAGCCCAAGTGGCCTAATATTCCAAAGTTGCCACTTCACAAGTGAGCCAGAAGTAACTACCTTGAACCCCAAGGTATCATTCTTGGGAAGACCATGGAGAATTTACTCTAGGGTAGTCATCATGGATTCTACAATAGATGACATTTTTGTCCCTCAAGGTTATATGCCATGGATGGGTAATGCATTCATAGACACATGTACATTTTATGAGTACAACAACAAAGGTGTTGGTGCTAACACTGCAGCAAGAGTGAAATGGCCTGGTGTTAAGGTCATAACACCTTCTGAAGCTGCTGATTTCTATCCAGGAAAGTTCTATGAGATTGCTAACGTAACTCAACGTGATTCTTGGATTGTTAACTCTGGTGTACCATATTCACTAGGACCCATTACCAATGCCAATGCTGCAACACAATAG 1779 0.4413 MAGSVVENGQAQKKKYVILGVSSMLLVAMVGAVAIGLTPSGSSDHGAAEISSSQKNAEVLCQSTEYKNTCIKSLDKASNTTDVKALVKMAFNSTAKELLRKMHNSTLFKELAKDNMTKQALDICKEVFGYAIDDIHKSINSLDSLELSKLSQYAYDLKVWLAGTLSHQQTCLDGFENSKTQAGETMKNALNSSMELSSNAVDLINTASALLKGLNLNYSELSSAIAGRRLLTEEEQQEQLVDGFPSWVSDGQRRLLQAAPGGVAIKANAVVAQDGSGQFKTLTDALKTVPKKNAVPFVIHVKEGVYNEYVILTKFMTNVTIIGDGPTKTIFTGSKNYKDGFQTYNTATFGVNAANFIAKDIGFENTAGSEKHQAVALRVTADQAVFHNCKMDGFQDTLYVQSKRQFYRDCTISGTIDFIFGDAVAVFQNCKLVVRKPLEDQNCMVTAGGRIKLESPSGLIFQSCHFTSEPEVTTLNPKVSFLGRPWRIYSRVVIMDSTIDDIFVPQGYMPWMGNAFIDTCTFYEYNNKGVGANTAARVKWPGVKVITPSEAADFYPGKFYEIANVTQRDSWIVNSGVPYSLGPITNANAATQ 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1284 592 PANTHER PECTINESTERASE 8 587 - -
Lal5g1284 592 CDD PMEI-like_3 60 209 - -
Lal5g1284 592 SMART PMEI_2 52 203 IPR006501 GO:0004857
Lal5g1284 592 PANTHER PECTINESTERASE 8 587 - -
Lal5g1284 592 SUPERFAMILY Pectin lyase-like 263 581 IPR011050 -
Lal5g1284 592 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 207 IPR035513 -
Lal5g1284 592 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Lal5g1284 592 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
Lal5g1284 592 Pfam Plant invertase/pectin methylesterase inhibitor 60 202 IPR006501 GO:0004857
Lal5g1284 592 Pfam Pectinesterase 268 559 IPR000070 GO:0030599|GO:0042545
Lal5g1284 592 Gene3D - 262 583 IPR012334 -
Lal5g1284 592 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 206 IPR006501 GO:0004857
Lal5g1284 592 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 206 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1284 Lal-Chr5 15520119 15522470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1284 12 591 Carbohydrate Esterase AT3G05610 44.786 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1284 K01051 - gmx:100800194 781.941