Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1280 ATGGGTTCAAGTCACGGAAACAACCTCTTCACTTATGAGGGTAAAACTGTGTACATCTACCCTTCCCAGACCCAATTAGGTAGTATGGAGATATCATTGTTAAAGGTGCTTGTTGATGGCATATCCTCATTTTTGCATTTATTGTTTTCTGGAAATAAGAACTCAGAACCTGTCACAAAGTATTACCAAAAGGCTGAGGAGATACTTAAGTTGTTGAAGCCAATCTTTGATGTGATTGTTAATTCTGAGTTTGCTTCTGATGAAGTGCTTTGTAAGTTATTTGAAGATCTTGGTCATGCTGTTGATGAATTAAGGGAGCACATTGAGAACTGGCACCTATTGTCTAGCAAAGTTTACTTTGAACAAATGATAGGATGGGTGTATTTTGTTTTGTCATCTTCTCTTTCCCTCTTGCACGGACCCTTGGAGAACTACAACACCAAAGATTTCTATTATGCGTCACTGCACACGCTGGTTGGTTGTGCACTAGCCCTGGAAGAATACCACAATGTCAGATCAACCACTTGTTTTGCTCGTTTGCCACTGGGAGACATGGTTAAGCAAGCTGAACCCTTGATATCTAGGATTCGAACTTCAGGGCTCAATATTTTCCAGCAGCTGAAAGCTTTCCACCATTGCCTCCCTGATGGATTGAGTTCTGAACATGTAGAGCACTGTCTTCAGAAACTCGAGCATTTGGGATACAATGAAACCTCGTCAGTCATCGAGGAAGCTATTATGGAACAACAGGATGGTGTAGGGCCGACTTCAGAGGTAATGACAAAAATTGCTAATAGCCTGGGCTTAAGGTCTAATGAAGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAAGTTGAAGGAGAATGCTGAACAAACCGAAAATACTGCAGAAGCTGAATACATTGATCAAATAATTGCTGTTGTTACATGTATGCATGAACGTCTTGTTATGCTTAAGCAAGCCCAGAGTTGCAGCCCGGTTCCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACTGATCCAGTGATTGTGGCATCAGGCCAAACCTATGAGCGGGCTTTTATCAAGAACTGGATTGATGCTGGCCTTACTGTTTGTCCAAAAACACGCCAGACTCTGTCTCACACAAACCTAATACCTAACTACACTGTAAAGGCACTAATCGCAAACTGGTGTGAGTCAAACAATGTGAAGCTGGTTGATCCCCCCAAGTCCACAAATTTAAATCAAGTATCTGTTCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCACCTGTTTTTGCTCATTCAAGGAGCAACCAGCCATCCTCACCTGAGTCGGCTCCTTCTCGTTCTTGTAGTTCACCAGGTAATAACTTAACTTCTGGTGGAATCCAGCAAGAGGGAACATCACCACTGCATCCTCGTTTAACTTCAGAAGGTTCCTTAAGTGGCATGGTTAATGAACAATATATGGATCTTGTGAGAATGTCACCCACAGGTTTAGATGATAGGTCTGCTAGCTCAGGTGAAAGCAATGTAGATTCAGCTGGCCAACCATCAATTTCGCCATCTAGAAGGGAATCTTCCAGTGCCTTCAGCTCTGAACAATCTCAAACCCATGTCAGAACCGTTTCTGATTCCAGTGCACTTTCGAGTGCAAAATTTCCTCAAGAAACACAGGGTGATGAGAACAGTGCTCCTCAACTTTCAACAAGTCCAAGCTACAGCAGAGCTGCTTCTGGTGAATTGAATCCTGGGCTAGATGCTGCTGGTGCTCCTGCCATGCCATCACCACATAGAGAACCTGAGTTCCCACCTCGTTTCGTGGAAACAAGGTCTCGAAGCCAAGCTTTGTGGCGGCGACCATCCGAGAGGCTTGGTTCTAGGATAGTATCTTCTCCTGCTATTGAAACAAGAGCTGATCTGTCTGCTATTGAAAACAGGATTCGGACTATTGTCGAGGGTTTGAGGAGCTCTGATCTTGATAGTCAGAGAGGGGCAACGGCTGAACTTCGTCTTCTTGCAAAGCACAATATGGATAATCGAATTGCGATTGCAAACTGTGGAGCCATTAGCTTATTAGTTGACTTACTTCGGTCGACTGATACTAGGATCCAGGAAAATGCTGTTACAGCACTTCTCAACTTATCTATCAATGATAACAACAAAGCTGCAATCGCGAATGCTGGTGCAATAGAACCTTTGATTCATGTGCTTGAAACAGGGAGCGCAGAGGCCAAGGAAAATTCAGCTGCCACTCTTTTCAGTTTATCAGTGATTGAGGAAAACAAGATCACCATAGGGAGGTCTGGGGCAATTAGACCATTGGTTGATTTACTAGGGAATGGAACCCCTAGGGGGAAGAAAGATGCTGCAACTGCTTTGTTTAATTTATCAATATTCCACGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAAGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGATAAGGCTGTGGCTGTCCTAGCAAATCTTGCTACAATTCCTGAAGGAAGGAATGCAATTGGTCAGGAATGTGGGATTCCTGTTCTTGTTGAGGTTGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCAGCAGCTCTTCTTCATCTTTGCTTACATAGTAACAGATTTTTAAGCATGGTGCTGCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTATCACAGTCAGGAACCCCAAGGGCCAAAGAAAAAGCTCAGGCTCTCCTCAATCAATTTAGAAGTCAAAGACATGGTAATTCTGGGAGAAACTGA 2799 0.4391 MGSSHGNNLFTYEGKTVYIYPSQTQLGSMEISLLKVLVDGISSFLHLLFSGNKNSEPVTKYYQKAEEILKLLKPIFDVIVNSEFASDEVLCKLFEDLGHAVDELREHIENWHLLSSKVYFEQMIGWVYFVLSSSLSLLHGPLENYNTKDFYYASLHTLVGCALALEEYHNVRSTTCFARLPLGDMVKQAEPLISRIRTSGLNIFQQLKAFHHCLPDGLSSEHVEHCLQKLEHLGYNETSSVIEEAIMEQQDGVGPTSEVMTKIANSLGLRSNEEVLIEAVALEKLKENAEQTENTAEAEYIDQIIAVVTCMHERLVMLKQAQSCSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDAGLTVCPKTRQTLSHTNLIPNYTVKALIANWCESNNVKLVDPPKSTNLNQVSVLHGYMESGTTRESPVFAHSRSNQPSSPESAPSRSCSSPGNNLTSGGIQQEGTSPLHPRLTSEGSLSGMVNEQYMDLVRMSPTGLDDRSASSGESNVDSAGQPSISPSRRESSSAFSSEQSQTHVRTVSDSSALSSAKFPQETQGDENSAPQLSTSPSYSRAASGELNPGLDAAGAPAMPSPHREPEFPPRFVETRSRSQALWRRPSERLGSRIVSSPAIETRADLSAIENRIRTIVEGLRSSDLDSQRGATAELRLLAKHNMDNRIAIANCGAISLLVDLLRSTDTRIQENAVTALLNLSINDNNKAAIANAGAIEPLIHVLETGSAEAKENSAATLFSLSVIEENKITIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGQECGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSMVLQEGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRN 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1280 932 SUPERFAMILY ARM repeat 648 921 IPR016024 -
Lal5g1280 932 Pfam U-box domain 329 399 IPR003613 GO:0004842|GO:0016567
Lal5g1280 932 SMART arm_5 678 718 IPR000225 GO:0005515
Lal5g1280 932 SMART arm_5 760 800 IPR000225 GO:0005515
Lal5g1280 932 SMART arm_5 841 881 IPR000225 GO:0005515
Lal5g1280 932 SMART arm_5 801 840 IPR000225 GO:0005515
Lal5g1280 932 SMART arm_5 719 759 IPR000225 GO:0005515
Lal5g1280 932 PANTHER U BOX DOMAIN-CONTAINING 186 928 - -
Lal5g1280 932 PANTHER U BOX DOMAIN-CONTAINING 37 121 - -
Lal5g1280 932 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 37 121 - -
Lal5g1280 932 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 186 928 - -
Lal5g1280 932 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 403 IPR013083 -
Lal5g1280 932 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 812 853 IPR000225 GO:0005515
Lal5g1280 932 SUPERFAMILY RING/U-box 321 406 - -
Lal5g1280 932 SMART Ubox_2 332 395 IPR003613 GO:0004842|GO:0016567
Lal5g1280 932 MobiDBLite consensus disorder prediction 430 481 - -
Lal5g1280 932 MobiDBLite consensus disorder prediction 498 616 - -
Lal5g1280 932 Coils Coil 272 302 - -
Lal5g1280 932 MobiDBLite consensus disorder prediction 501 579 - -
Lal5g1280 932 CDD RING-Ubox_PUB 333 375 IPR045210 -
Lal5g1280 932 Gene3D - 628 927 IPR011989 -
Lal5g1280 932 ProSiteProfiles U-box domain profile. 328 402 IPR003613 GO:0004842|GO:0016567
Lal5g1280 932 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 689 731 IPR000225 GO:0005515
Lal5g1280 932 Pfam Armadillo/beta-catenin-like repeat 719 758 IPR000225 GO:0005515
Lal5g1280 932 Pfam Armadillo/beta-catenin-like repeat 762 799 IPR000225 GO:0005515
Lal5g1280 932 Pfam Armadillo/beta-catenin-like repeat 680 717 IPR000225 GO:0005515
Lal5g1280 932 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 771 813 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1280 Lal-Chr5 15494579 15500102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1280 289 931 U-box Gene Family AT2G23140 63.566 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1280 - - gmx:100811250 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1280 5 15494579 15500102 Lal3g0432 3 3004767 3011250 LSH
Lal5g1280 5 15494579 15500102 Lal22g0326 22 2061579 2066478 PCT
Lal22g0326 22 2061579 2066478 Lal5g1280 5 15494579 15500102 PCT