Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1279 ATGCAAAGATATGAGTTGGGAAGATTGCTAGGTCAAGGTACCTTTGGAAAGGTTTACTATGCTAGGAGTTCAATAACTAACCAGAGTGTGGCTATCAAAATGATTGACAAAGACAAGGTCATGAGAACTGGGCAAGCTGATCAAATCAAGCGCGAAATATCGGTTATGAGCCGGGCGAAACATCCCAATATTATAGAACTTTTCGAGGTTATGGCCACCAGGACTAAGATTTACTTTGTTATGGAGTATGCTAAAGGTGGTGAGCTCTTCAACAAGGTGGCCAAAGGAAAACTCAATGAAGATGTTGCACACAAGTATTTTAAGCAGCTAGTTAATGCAGTTGATTTTTGTCACAGTAGAGGCGTATACCACCGCGATATAAAGCCAGAGAACATTTTGTTGGACGAAATTGGGAATTTGAAGGTCTCAGATTTTGGTTTAAGTGCTCTAACTCAGTCAAATCGACAGGACGGCTTACTCCATACATCTTGTGGCACCCCGGCTTATGTTGCTCCTGAAATCATCAAAAGGAAGGGATATGATGGTGCCAAAGCTGATATATGGTCTTGTGGGATAGTTCTATTTGTCTTACTGGCAGGTTATCTCCCTTTCCGTGACTCGAATTTGATAGAGATGTATAGGAAGATAAGCAAAGCGGAATTTAAGTGTCCTAATTGGTTCCCACCAGAAGTATGCAGATTGTTGTCCAAGATATTGGATCCAAATCCAGAGACTAGGATTTCGATAGCCAGGGTTAAGGAATCTTCGTGGTTTAAGAAAGGACCGAATGCTGGGCGCAAAAAGCATGAATCGGAAAACAACAATGCCTCTTCTTCAGGGACAAATATTTCTTATCAAAGTGATGATGTTCCTGCAGCAGAAACAAGGGAAGAGTCAGTTATGCCTAAAAGTATAAATGCCTTTGATATCATCTCCCTTTCTTCAAGTTTCGATCTTTCTAAATTCTTCGGTGACGGTTTTAGGAAAAGAGCAGCAAGATTCACTTCAAGACAACCTGCATCAGCCATCATATCAAAGCTGGAAGAAATTGCGAATCGACTTAGACTAAAGATAAATAAAAAAGCTGGTGGTTTGTTGAAATTAGAAGGACTCAATGAAGGTAGAAAAGGGGTTTTATCCATTGATGCAGAGATCTTTGAGCTTGCCCCTTTATTCCATTTGGTGGAGGTGAAAAAATCAAATGGTGATACATTGGAATATCAGAAAATATTGAATGAGGATATAAGGCCTTCTCTTCAGGATATTGTTTGGGTCTGGCAAACTGACCAACAACAGCAATCTCAACAATCAGAAACAATAGTTGTTTGA 1329 0.4003 MQRYELGRLLGQGTFGKVYYARSSITNQSVAIKMIDKDKVMRTGQADQIKREISVMSRAKHPNIIELFEVMATRTKIYFVMEYAKGGELFNKVAKGKLNEDVAHKYFKQLVNAVDFCHSRGVYHRDIKPENILLDEIGNLKVSDFGLSALTQSNRQDGLLHTSCGTPAYVAPEIIKRKGYDGAKADIWSCGIVLFVLLAGYLPFRDSNLIEMYRKISKAEFKCPNWFPPEVCRLLSKILDPNPETRISIARVKESSWFKKGPNAGRKKHESENNNASSSGTNISYQSDDVPAAETREESVMPKSINAFDIISLSSSFDLSKFFGDGFRKRAARFTSRQPASAIISKLEEIANRLRLKINKKAGGLLKLEGLNEGRKGVLSIDAEIFELAPLFHLVEVKKSNGDTLEYQKILNEDIRPSLQDIVWVWQTDQQQQSQQSETIVV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1279 442 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 439 - -
Lal5g1279 442 MobiDBLite consensus disorder prediction 274 289 - -
Lal5g1279 442 Pfam NAF domain 302 360 IPR004041 GO:0007165
Lal5g1279 442 Pfam Protein kinase domain 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1279 442 SUPERFAMILY Protein kinase-like (PK-like) 2 259 IPR011009 -
Lal5g1279 442 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1279 442 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Lal5g1279 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Lal5g1279 442 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1279 442 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lal5g1279 442 Gene3D Transferase(Phosphotransferase) domain 1 91 303 - -
Lal5g1279 442 Gene3D Kinase associated domain 1, KA1 304 425 - -
Lal5g1279 442 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Lal5g1279 442 PANTHER - 1 439 - -
Lal5g1279 442 CDD CIPK_C 306 420 - -
Lal5g1279 442 MobiDBLite consensus disorder prediction 260 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1279 Lal-Chr5 15489781 15491109 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1279 3 432 CBL-interacting serine-threonine protein kinases AT5G58380 66.667 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal5g1279 Pkinase 9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1279 - - gmx:100790905 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1279 5 15489781 15491109 Lal5g1279 5 15489781 15491109 ECH
Lal5g1279 5 15489781 15491109 Lal4g1598 4 20158107 20160049 ECH
Lal14g0790 14 9840179 9841848 Lal5g1279 5 15489781 15491109 ECH
Lal9g1714 9 19385994 19388894 Lal5g1279 5 15489781 15491109 ECH
Lal5g1279 5 15489781 15491109 Lal18g1274 18 15353647 15355364 PCT
Lal18g1274 18 15353647 15355364 Lal5g1279 5 15489781 15491109 PCT