Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1277 ATGCCGGAGATCGAACACGCCGCCGCTGCAGCGTCGTCTGAGGAGGAAACCGCGTTGTTCGGGAAATACGAACTTGGCCGTCTCCTCGGATGCGGCGCGTTCGCGAAGGTGTACTACGCGCGGAACGTGAAAACGGGTCAAAGCGTGGCGGTGAAGATAATCAACAAGAAGAAACTCGCCGGAACAAGCCTCGCCGGAAACGTGAAGCGCGAGATCTCGATCATGAGCAAGCTCCACCACCCTCACATCGTGCGTCTCTACGAAGTTCTCGCCACAAAGACGAAGATCTTCTTCGTAATCGAACTCGTTCGCGGTGGTGAACTTTTCGCTAAAATTTCGAAGGGTCGTTTTTCTGAAGATCTAAGCCGTCGATATTTTCATCAGTTAATCTCAGCCATCGGTTATTGCCACTCACGTGGCGTGTTCCATCGTGATTTGAAACCAGAGAATCTCTTAATCGATGAGAATGGAAGTTTAAAAGTTTCGGATTTCGGGTTAAGTGCGGTTCGGGAACAGATCCGACCCGATGGGTTGCTCCATACCCTTTGTGGAACACCCGCTTACGTGGCACCTGAGATTTTAGCAAAACGAGGTTATGACGGCGCTAAAGTTGACGTCTGGTCCTGCGGCGTCGTTTTGTTCGTTCTTGCAGCTGGTTATTTACCGTTTAATGACCCCAATTTGATGGTTATGTATAGGAAGATTTATAAAGGTGAGTTTCGTTGTCCACGTTGGATGTCACAGGAGCTTCGACGATTTATGTCGAAACTCCTGGATACTAATCCGGAGACCCGGATCACCGTCGACGCGATGACCCGGGACCCGTGGTTTAAAAAGGGGTATAAAGAGATTAAATTTCATGAGGAGGATTATGGTGGAGGGTTCGGATCAAAAGGTGACAGATCAGAGAAGGTGGTGGAATTGAATGCGTTTGATATCATATCGTTTTCATCGGGTTTGGATTTGTCTGGGTTGTTTCAGCAGATGGATGGCGGTGAAAGGGTGGTGTTACCGGGGTCGCCGGAGAAGGTAGTGGAGTTAGTGGAGGAGGTGGCGGTTGCGGTGGGGTTGGCGGTGAGGTGGAAGAATGAATGTGGGGTTGAGCTCGAAGGGGTTAATGTGAATTTTGGAATTGGGGTTGAGGTTTACCGGTTAACGGAGGAGCTGGTGGTGGTTGAGGTAAATCGGAGAGGCTGTGACATGGTGGCGTTTAGGGATGTGTGGGAGAATAAGCTTAAGCCTAAGCTGTTATGCTCTTCCAGTGTTGCTACGACGTCGCTTCATGAGTTACCTGAGTTGCAGGTTGCCGGTGACTAA 1317 0.4996 MPEIEHAAAAASSEEETALFGKYELGRLLGCGAFAKVYYARNVKTGQSVAVKIINKKKLAGTSLAGNVKREISIMSKLHHPHIVRLYEVLATKTKIFFVIELVRGGELFAKISKGRFSEDLSRRYFHQLISAIGYCHSRGVFHRDLKPENLLIDENGSLKVSDFGLSAVREQIRPDGLLHTLCGTPAYVAPEILAKRGYDGAKVDVWSCGVVLFVLAAGYLPFNDPNLMVMYRKIYKGEFRCPRWMSQELRRFMSKLLDTNPETRITVDAMTRDPWFKKGYKEIKFHEEDYGGGFGSKGDRSEKVVELNAFDIISFSSGLDLSGLFQQMDGGERVVLPGSPEKVVELVEEVAVAVGLAVRWKNECGVELEGVNVNFGIGVEVYRLTEELVVVEVNRRGCDMVAFRDVWENKLKPKLLCSSSVATTSLHELPELQVAGD 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1277 438 Gene3D Kinase associated domain 1, KA1 307 418 - -
Lal5g1277 438 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Lal5g1277 438 CDD CIPK_C 309 416 - -
Lal5g1277 438 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 422 - -
Lal5g1277 438 SMART serkin_6 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1277 438 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1277 438 ProSiteProfiles Protein kinase domain profile. 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1277 438 Pfam NAF domain 307 360 IPR004041 GO:0007165
Lal5g1277 438 Gene3D Transferase(Phosphotransferase) domain 1 13 306 - -
Lal5g1277 438 PANTHER - 1 422 - -
Lal5g1277 438 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Lal5g1277 438 SUPERFAMILY Protein kinase-like (PK-like) 20 285 IPR011009 -
Lal5g1277 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1277 Lal-Chr5 15481264 15482580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1277 1 426 CBL-interacting serine-threonine protein kinases AT2G30360 63.242 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal5g1277 Pkinase 4.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1277 - K12761 gmx:100799169 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1277 5 15481264 15482580 Lal5g1277 5 15481264 15482580 ECH
Lal5g1277 5 15481264 15482580 Lal6g0354 6 2249301 2250551 PCT
Lal6g0354 6 2249301 2250551 Lal5g1277 5 15481264 15482580 PCT