Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1266 ATGACTGGGAAGAAAGTGAAACTTGCATTCATACTCAATGAATCTGCAAGAAAAGCAACATACAATAGAAGAAAGAAGGGTTTATTGAAAAAGCTGAATGAACTTAGCACACTTTGTGGAATTGAAGCTTGTGCTATAGTTTATAGTCCTTATGAGCATCAACCTGAAGTTTGGCCTTCACCATCAGGGGTTCAAAGGGTGTTTGCAAAGTTCAATAACATACCTGAATCAGAGAAAAGCAAGAAGATGGTGAATCAAGAAGCTTTTCTTAAACAAAGGATTCTGAAGTCTGTGGAACAAGTAAAGAATTTGAGGAGAGAAAATAGAAAATTGGAAATAACTCTTCTTATGTTTCATTGCCTTAGTGTTGGTAAGATTTTGCATAACAATATGAGCAATATTGATTTGAATGATCTTGCATGGTTAATTGACCAAAACTTGAAGGAAATTGGTCGAAGGATTGGAACATAG 471 0.3503 MTGKKVKLAFILNESARKATYNRRKKGLLKKLNELSTLCGIEACAIVYSPYEHQPEVWPSPSGVQRVFAKFNNIPESEKSKKMVNQEAFLKQRILKSVEQVKNLRRENRKLEITLLMFHCLSVGKILHNNMSNIDLNDLAWLIDQNLKEIGRRIGT 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1266 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal5g1266 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lal5g1266 156 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Lal5g1266 156 Coils Coil 94 114 - -
Lal5g1266 156 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal5g1266 156 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Lal5g1266 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lal5g1266 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal5g1266 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal5g1266 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal5g1266 156 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 154 - -
Lal5g1266 156 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1266 Lal-Chr5 15388419 15388889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1266 1 154 Type I MADS-box Gene Family AT5G48670 57.792 1.26e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal5g1266 SRF-TF 4.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1266 - - gmx:100813231 221.861