Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1264 ATGCACCAAGTGCGGGATATGCATATCGATGTATCAAATACGTATCATATCCAATGCTTGTATCAATATCGGTGTTTCACAGCCCTCGATCATGAATTGTGGACGCCAGGATTCAAGGAGGAATGGAAGCATGGCATTCTTGATCCATTATCGGCTTATGAGATGTCAGTTTTTTGTGATAAATTCCACCATCAAAAACCTGGATGGGTTGACTGTAAATTTTGCAACAAGCCTATCCATTGTGGATGCGTAGTATCTAGATCTTTGTTCGAGTACCTTGATTTCGATGGCATAGGTTGTGTTAGCTGTATAGCTTCCCAACTTCGTATGATAAGGAATACTGAAAATCCTAACGGGTCTATTTCATCAACCAAAAATAATGCAAGTGATCGGCACCCTGCTCATATTAATGGCACACTGTTTGCGGATAGTGTTGATGAAGGAAAACTTATGCAATTGTGCAGAATTGTTGAAGCTAGTGAATCCAGCCATTGGAATAATGCTCAGAGAGATAGCAGAATATCGCCTACTGGACAAAACAGCCAAGAAGTGAAGTTTTCATCGGGGGAGGCGGATACTAGATTTCCAGATGTGGTTAAACCATCGGTTCAGTCGCTAACATTTTCTAAATTAGAAAATAATAGATCGACATGGGAGATTAAAAACATACATGAATCAAGTGCACAACCATCTTTGAATGGAAATCCATCAGGAAACAACAATGTCCTGCCTTCTTCTGGAGAGTTCGTAGAAGCAAGACTTGACGGGAAAGCATCTCCTCCCTTTCATCAAGGGCAAAGATTCCGCCCTATATTGCGCAAGCCATCGAAGAATGGGCTACCGATGGATCTGGAACCAGATAAAGGAACACTTTCTCATGCACGAATTGCCCGGGCACCTGCTGAGGGGAGGGGCAAGAGTCAGTTGCTTCCGCGATATTGGCCCAGGATCACTGATCAAGAGCTGGAGCAGTTGTCCGGAGATTTGAACTCCACTGTAGTGCCTTTATTTGAGAAGGTATTGAGTGCCAGTGATGCCGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCCTATTTCGAGTGCTGATGGCCTTCCTTTGCCAGTCCAAGATGTGAAAGGAAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTGTTGGAGGGTGTAACCCCTTGCATACAAGCCATGCAATTATGTGCTGGTGATACTGTAATATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATGGGTTTCAGAAAGGCATCGAATTCTATAGATACACAGGATGCTTCTACATCTGCCCATTCTAATGGCATTTCAACAAAGGGAACAATCAATTCTGGTGGAACCGAGAATCTGCCTTCGGGTAGAAGCTATGCTGATCTTCTCCAGTCGATAAAAGGGAATGGGGAACCTCACTTAAATGGACATCCGGGACATCTTCGTTTGCGTGTTGGAGCTGCTGGTTTGCTAAATACAGAAAATTGCGAGAAAACAAACAATCATTCACCGCAGAAACCAATTCCAGTTTCAGAGAAGAAGAGGACTCGTAATATTGGGCCTAAAAGCAAAAGGTTGCGCATTGACAACGAAGATGCTATGGAGTTGAGACTTACATGGGAAGAAGCACATGATTTGCTTCGTCCACCGTCAAGTGTCCAACCAGTCATTGTCACAATTGAGGGCCAAGAAGTTGAAGAATACGAGGAACCACCGGTTTTTGGAAAGAGAACTATAGTCTGTATCTGTTCATCTGGGGGGAAAGTACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGGAGGCTGCCAGTGGATGCTGTTCTTCCTCCCAAGTGGACATGTTTTGAAAATGTTTGGGATGCACGCAGGTCTACATGTACCGTGCCAGAGGAGGAAAGTTCAAAGGAATTAGAAAATCTTCTGATACCCAACAAAGATTTTAAGAAGCGAAGAACTCTAGAAAATGGCAAGTCAATCAAAGAGCACAAGCCTTCTGGATTAGATGCTCTTGCCAGTGCAGCAGTTTTAGGAGAAAATCTTATCGACCCTGCCGAGTTGTCAGCTGGAGCCACCACGAAACATCCTAGACACCGCCCAGGATGCACTTGTATTGTGTGCATTCAGCCACCTAGTGGAAAGGGGAGACATAAGCCAACCTGTACTTGCAATGTGTGCATGAGCGTGAAGCGTCGGTTCAAAACCATTAGGCTACGAAAGAAGAAACGCCAATTGGAACGCGAAGCAGATGCTGCAGATAAAAAAGATCATAATCACCTGAGAGACAAATCAGAAGCCAATGGAACATCAAAATCGAAAGATATTACAAGCCATTTGGAGAAAAAGGGAGGACTTAAAGATCAGACTGAGGTGGGTGAGTCGGGTGCTGGACAAGTAGACTTGAATTCTCATCCCAACCGCGCCGATACGCAAATGGATATAACAGGACTTAGCATGTCTATTAATCATCTTGAAATTACAAACAATCAGGTAAGTGAATATATGAATCAGAATGGCTTAAAAAGGTTCAATAGTGAAGTGCAGGGTAGTCAGAATTCTTCATTACTCACTCAATCTAATGGAGAAGGTAAGGAATACTTACCTGTTGAACAAAGTCAAAACAATCTTTCTTGA 2682 0.4333 MHQVRDMHIDVSNTYHIQCLYQYRCFTALDHELWTPGFKEEWKHGILDPLSAYEMSVFCDKFHHQKPGWVDCKFCNKPIHCGCVVSRSLFEYLDFDGIGCVSCIASQLRMIRNTENPNGSISSTKNNASDRHPAHINGTLFADSVDEGKLMQLCRIVEASESSHWNNAQRDSRISPTGQNSQEVKFSSGEADTRFPDVVKPSVQSLTFSKLENNRSTWEIKNIHESSAQPSLNGNPSGNNNVLPSSGEFVEARLDGKASPPFHQGQRFRPILRKPSKNGLPMDLEPDKGTLSHARIARAPAEGRGKSQLLPRYWPRITDQELEQLSGDLNSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISSADGLPLPVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLCAGDTVIFSRIDPGGKLVMGFRKASNSIDTQDASTSAHSNGISTKGTINSGGTENLPSGRSYADLLQSIKGNGEPHLNGHPGHLRLRVGAAGLLNTENCEKTNNHSPQKPIPVSEKKRTRNIGPKSKRLRIDNEDAMELRLTWEEAHDLLRPPSSVQPVIVTIEGQEVEEYEEPPVFGKRTIVCICSSGGKVQWAQCDDCSKWRRLPVDAVLPPKWTCFENVWDARRSTCTVPEEESSKELENLLIPNKDFKKRRTLENGKSIKEHKPSGLDALASAAVLGENLIDPAELSAGATTKHPRHRPGCTCIVCIQPPSGKGRHKPTCTCNVCMSVKRRFKTIRLRKKKRQLEREADAADKKDHNHLRDKSEANGTSKSKDITSHLEKKGGLKDQTEVGESGAGQVDLNSHPNRADTQMDITGLSMSINHLEITNNQVSEYMNQNGLKRFNSEVQGSQNSSLLTQSNGEGKEYLPVEQSQNNLS 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1264 893 MobiDBLite consensus disorder prediction 863 893 - -
Lal5g1264 893 Pfam B3 DNA binding domain 337 436 IPR003340 GO:0003677
Lal5g1264 893 MobiDBLite consensus disorder prediction 511 535 - -
Lal5g1264 893 MobiDBLite consensus disorder prediction 226 245 - -
Lal5g1264 893 Gene3D - 605 659 - -
Lal5g1264 893 MobiDBLite consensus disorder prediction 753 826 - -
Lal5g1264 893 CDD B3_DNA 335 436 IPR003340 GO:0003677
Lal5g1264 893 Gene3D - 315 442 IPR015300 -
Lal5g1264 893 ProSiteProfiles B3 DNA-binding domain profile. 337 438 IPR003340 GO:0003677
Lal5g1264 893 Pfam CW-type Zinc Finger 606 649 IPR011124 GO:0008270
Lal5g1264 893 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 51 867 - -
Lal5g1264 893 ProSiteProfiles Zinc finger CW-type profile. 601 651 IPR011124 GO:0008270
Lal5g1264 893 Coils Coil 751 771 - -
Lal5g1264 893 MobiDBLite consensus disorder prediction 165 188 - -
Lal5g1264 893 MobiDBLite consensus disorder prediction 165 198 - -
Lal5g1264 893 SUPERFAMILY DNA-binding pseudobarrel domain 335 439 IPR015300 -
Lal5g1264 893 SMART B3_2 337 438 IPR003340 GO:0003677
Lal5g1264 893 MobiDBLite consensus disorder prediction 443 469 - -
Lal5g1264 893 MobiDBLite consensus disorder prediction 811 826 - -
Lal5g1264 893 MobiDBLite consensus disorder prediction 758 804 - -
Lal5g1264 893 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 51 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1264 Lal-Chr5 15366268 15375048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1264 25 827 B3 DNA Binding Superfamily AT2G30470 46.764 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal5g1264 B3 7.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1264 - - lang:109337935 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1264 5 15366268 15375048 Lal5g1264 5 15366268 15375048 ECH
Lal5g1264 5 15366268 15375048 Lal3g0463 3 3173838 3181383 LSH
Lal5g1264 5 15366268 15375048 Lal11g0574 11 4619315 4627443 LSH
Lal5g1264 5 15366268 15375048 Lal22g0318 22 2017991 2024359 PCT
Lal5g1264 5 15366268 15375048 Lal6g0350 6 2213676 2220066 PCT
Lal22g0318 22 2017991 2024359 Lal5g1264 5 15366268 15375048 PCT
Lal6g0350 6 2213676 2220066 Lal5g1264 5 15366268 15375048 PCT