Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1256 ATGGTGCTAAACCAGGTAAACATGAAGGCTGACAAAGTTTACTCTCCATTGAAATGTGAAATTCCTATACCTTACAGCAAACAACTCTCCATGAAGCTCTATCTGACTTCAGTGGCTCCTTTCGTTTTTATCATATTTATTCTTTTTCCTCTGACAATTGCTGACCTGAGTTCAGATAAGCAAGCTCTTCTCGATTTTGCTAATGCTATCCCCCACTCCCGAAACCTTATGTGGAATCCAGCCACCTCTATATGTACATCTTGGGTAGGCATCACTTGCGATCAAAATGGAACTCGTGTTATTTATGTCCGGCTCCCTGGAGTTGGACTATGGGGTTCAATCCCAGCCAATACACTTGGCAAGCTTGACGCCGTGAAGATTATTAGCCTTCGCTCGAACCTGCTCAGTGGAAATTTGCCTGTTGATGTTGCTTCTCTTCCTTCACTCCAGTATCTCTACCTTCAGAATAATAACCTTTCTGGTCATATACCTGCCTCCTTGTCACCCAAACTCAATGTACTTGATTTGTCATATAATTCTTTCACCGGTGGCATTCCAAAGATTTTAGAGAATTTTACAGAACTAACTAGTTTGAATCTCAAGAACAATTCCCTATCTGGAAAGATACCGAATCTCGATGTTAGTAAACTCGGGCTTTTGAATTTAAGCTACAACCATTTGAATGGCTCTATACCCGAAGCTCTTCATAATTTTCCTAAGTCATCCTTTGAAGGAAACTCTCTTTTGTGTGGACCACCTCTAAAGCAATGCTCGATGGTTACCTCCACACCCGCCTTGACTCCAATTCCATCTACAGCTCCTCGAAGAAAAAGCTCGAAAAATAATATGAGTAAGGTAGCTATCATTGCAATTGCTGTTGGAGGGGCAGTGGTGCTATTTTTCATAGCACTTGTTATTGTTCTTTGCTGTATAAAGAAGAAAAACGGGGGAGGCTCCCGTGAAATTAAAGGGAAGGGTCCTAGTGCTGGTAGAGGCGAGAAGCCAAAAGAAGAGTTTGGGAGTGGGGTCCAAGAACCTGACAAAAACAAGTTGGTTTTCTTCGAGGGCAGTTCTTATAATTTCGATCTTGAGGATTTGCTAAGAGCTTCAGCCGAAGTTTTGGGAAAGGGTAGTTATGGTACTGCATATAAGGCTATATTGGAGGAGTCTGTAACAGTTGTGGTGAAAAGATTGAAAGAAGTTGTGGTAGGCAAGAGGGACTTTGAACAGCAGATGGAGATTATAGGAAGGGTTGGGCAACACCTGAATGTTGTGCCACTTCGCGCCTATTATTATTCGAAAGATGAAAAGCTTTTGGTTTATGACTATGTCCAAGGTGGCAACTTATCCACACTCTTGCATGGAAATAGATCAGGTGAAAGAATTCCGTTAAATTGGGAATCGCGGGTGAAAATATCCCTCGGAACTGCAAGAGGAATTGCCCACATACATTCTGTCAGTGGTCCAAAATTCACACATGGAAATATTAAGTCCTCAAATGTCCTCATCAACCAAGAGAATGATGGCTGCATTTCTGATTTCGGCCTAACCCCGCTTATGCATGTTCCTGCAACCCCTTTTAGAGCTGCAGGCTATCGTGCTCCCGAGGTAATTGAAATGCGTAAGCACACTCATAAATCAGATGTATACAGCTTTGGTGTTCTCCTTCTAGAGATGCTTACTGGGAAAGCACCTACCCAATCTCCTGGACACGACGACATTGTTGATCTCCCGAGGTGGGTACAATCTGTTGTTAGGGAGGAATGGACAGCCGAAGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTACAAATGTTGCAAATAGCCATGGCTTGTGTAGCAAAGATGCCAGATATGAGACCCAACATGGATGACGTAGTGAAAATGATCGAGGATATCAGGCAATTTGACTCGGACAACCGATCGTATAATGAAGAGAATAAATCGAAGGACTCAAATGTTCTATCTCCATAA 1992 0.4247 MVLNQVNMKADKVYSPLKCEIPIPYSKQLSMKLYLTSVAPFVFIIFILFPLTIADLSSDKQALLDFANAIPHSRNLMWNPATSICTSWVGITCDQNGTRVIYVRLPGVGLWGSIPANTLGKLDAVKIISLRSNLLSGNLPVDVASLPSLQYLYLQNNNLSGHIPASLSPKLNVLDLSYNSFTGGIPKILENFTELTSLNLKNNSLSGKIPNLDVSKLGLLNLSYNHLNGSIPEALHNFPKSSFEGNSLLCGPPLKQCSMVTSTPALTPIPSTAPRRKSSKNNMSKVAIIAIAVGGAVVLFFIALVIVLCCIKKKNGGGSREIKGKGPSAGRGEKPKEEFGSGVQEPDKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESVTVVVKRLKEVVVGKRDFEQQMEIIGRVGQHLNVVPLRAYYYSKDEKLLVYDYVQGGNLSTLLHGNRSGERIPLNWESRVKISLGTARGIAHIHSVSGPKFTHGNIKSSNVLINQENDGCISDFGLTPLMHVPATPFRAAGYRAPEVIEMRKHTHKSDVYSFGVLLLEMLTGKAPTQSPGHDDIVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPNMDDVVKMIEDIRQFDSDNRSYNEENKSKDSNVLSP 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1256 663 MobiDBLite consensus disorder prediction 644 663 - -
Lal5g1256 663 ProSiteProfiles Leucine-rich repeat profile. 194 216 IPR001611 GO:0005515
Lal5g1256 663 Pfam Leucine rich repeat N-terminal domain 57 94 IPR013210 -
Lal5g1256 663 MobiDBLite consensus disorder prediction 318 344 - -
Lal5g1256 663 CDD STKc_IRAK 374 639 - -
Lal5g1256 663 Gene3D Ribonuclease Inhibitor 56 212 IPR032675 -
Lal5g1256 663 Pfam Protein kinase domain 371 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1256 663 Pfam Leucine Rich Repeat 148 168 IPR001611 GO:0005515
Lal5g1256 663 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515
Lal5g1256 663 SUPERFAMILY L domain-like 58 255 - -
Lal5g1256 663 ProSitePatterns Protein kinases ATP-binding region signature. 374 405 IPR017441 GO:0005524
Lal5g1256 663 PANTHER LRR RECEPTOR-LIKE KINASE 21 663 - -
Lal5g1256 663 Gene3D Phosphorylase Kinase; domain 1 337 443 - -
Lal5g1256 663 Gene3D Transferase(Phosphotransferase) domain 1 444 661 - -
Lal5g1256 663 SUPERFAMILY Protein kinase-like (PK-like) 372 645 IPR011009 -
Lal5g1256 663 PANTHER OS05G0588300 PROTEIN 21 663 - -
Lal5g1256 663 Gene3D Ribonuclease Inhibitor 213 258 IPR032675 -
Lal5g1256 663 ProSiteProfiles Protein kinase domain profile. 368 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1256 Lal-Chr5 15317657 15320229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1256 36 660 Receptor kinase-like Gene Family AT5G58300 65.348 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lal5g1256 Pkinase 8.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1256 - - gmx:100796171 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1256 5 15317657 15320229 Lal5g1256 5 15317657 15320229 ECH
Lal5g1256 5 15317657 15320229 Lal3g0466 3 3210225 3214467 LSH
Lal5g1256 5 15317657 15320229 Lal18g1285 18 15440512 15445296 PCT
Lal18g1285 18 15440512 15445296 Lal5g1256 5 15317657 15320229 PCT