Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1242 ATGGCAGATCCTCAGAGAATTCATCCAATGCATGATGTAGAAGCACCTTCACAAAGAGATTCATCACCTTTGGTGCCAAGTAACATAGCTAAATCAGATAATGATAATTATCACCATCCACTACCACCACCACCTCAAAGAACCATTCCTATGATGCATTCAAAGCCACCAAAGAAAAAAAGAAGAAGTTGCTGCTGCAAATTCTTCTGTTGTATCTTCAGCACATTGTTCATTCTTATAGTTGCTATTGCAATCACTGCTGGAACATTGTACCTTGTTTTTAAGCCAAAACTTCCAAAATATTCAGTTGATGAACTTAGAATAAATCAGTTTAATGGTTCTGAAAATAACAACTTTTCTGTAACTTTCAATGTTACAGTCACTGCTAGGAACCCAAACAAAAAGATTGGAATTTACTATGTTGGTGGTAGCCAAATAACTGCATGGTATGAAGAAACACAATTATGTGAAGGGTCTTTGCCAAAATTCTATCAGGGTCATGGAAACATTACAGTGCTTAATATTTCTATGGTAGGGCAAACACAGGATACAAATGACCTAGTAAATACATTGATGCAGGAACAAAAGGGTAATATACCTCTTAATCTTAAGGTCACACAACCAGTGAGGATTAAACTTGGGAAGTTGAAGCTCTTCAAAATCAACTTCAGGGTTAGTTGCAACATTTTGGTGGATAGCCTCACTGATACTAAAGTTATTAGTAATAGTTGTAAGTTCAAGTTTAGGCTATGA 753 0.3599 MADPQRIHPMHDVEAPSQRDSSPLVPSNIAKSDNDNYHHPLPPPPQRTIPMMHSKPPKKKRRSCCCKFFCCIFSTLFILIVAIAITAGTLYLVFKPKLPKYSVDELRINQFNGSENNNFSVTFNVTVTARNPNKKIGIYYVGGSQITAWYEETQLCEGSLPKFYQGHGNITVLNISMVGQTQDTNDLVNTLMQEQKGNIPLNLKVTQPVRIKLGKLKLFKINFRVSCNILVDSLTDTKVISNSCKFKFRL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1242 250 PANTHER EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN, PUTATIVE-RELATED 46 247 - -
Lal5g1242 250 Pfam Late embryogenesis abundant protein 126 227 IPR004864 -
Lal5g1242 250 MobiDBLite consensus disorder prediction 1 15 - -
Lal5g1242 250 MobiDBLite consensus disorder prediction 20 34 - -
Lal5g1242 250 MobiDBLite consensus disorder prediction 1 55 - -
Lal5g1242 250 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 46 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1242 Lal-Chr5 15156890 15157642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1242 58 240 EF-hand Containing Proteins AT5G21130 29.189 6.31e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1242 - - mtr:MTR_5g076170 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1242 5 15156890 15157642 Lal3g0484 3 3432190 3432969 LSH
Lal5g1242 5 15156890 15157642 Lal18g0368 18 3135445 3139477 LSH
Lal5g1242 5 15156890 15157642 Lal22g0309 22 1948701 1949447 PCT
Lal22g0309 22 1948701 1949447 Lal5g1242 5 15156890 15157642 PCT