Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1239 ATGGGTTCAACATCAGATTCATCTATCAAGGTTTTGAAGAAGGAAGATGAAGAAGCATTGATTGGGCAAGTTGAAATATGGGAACACATGTGCAGCTTCACATATTCTGTGGCACTGAAATCTGCTGTGGAATTGCGCATAGCTGATATAATAAACCGTTATGATAAACCAATATCCTTATCCAAAATTGTTGAGAACATTGAAAATGCAGCCTCACCAGATATCTCATTGCTCCAAAGAATCATGAGAGTATTGGTTAGGAGAAAGATATTCAGTGCAGAGAAATCAGAGAGTAATGGAGAGACCCTTTTCGGCTTAACCCGCGCTTCGAAATGGATCCTACTTGATGGCACAAACATGACCTTAGCACCAATGTTGCTGCTAGAAAATCACCCATTGCATTTGAGTCCTTGTCACTATGTTAGTGATATTATAAGAGAAGGCACAAAAAATGGCACTGCATTTTTTAGATGCCATGGTCATGAACAATTTGAGATGACTGGTTTGGACCCTGAATATAACAAGTTGTTCAATGAAGGCATGGTTTGCACTGCAAGGATTGTGTCTCAGGCTGTGATTTCTGGATACAAAGATGGGTTTAATAAGATTCAGACTTTGGTTGATGTAGGAGGTGGAATTGGAGGTTCACTTTCTGAGATTGTAAGAGCCTATCCTCATATCAAAGCTATCAACTTTGATTTGCCTCATGTGATTGGAACAGCACCTGAGTATGATGGAATTACCCATGTTGGAGGAGACATGTTTGTATCCATTCCTAATGCTGATGCTGTTTATATGAAGTGGATTCTACATGACTGGAGTGATGAACACTGCATCAAAATCCTGAAGAATTGTAGGAAGGCAATACCAGAGAAAACAGGAAAGGTGATAATTGTGGATCATATTCTTGAGCCAGAAGGGAATGAGTTATTCAGTAACACTGGTTTTGCTTTTGATATGATGCTACTTGCACATAATGCTGGTGGCAAAGAAAGGACTGAAGAGAATTGGAAGTGGCTATTTAATGAAACAGGATTTCCTCATTACAACATTATTAAGATTAAAGCTCTTCCATCAATCATTGAAGCTTTTCCAATATGA 1101 0.3878 MGSTSDSSIKVLKKEDEEALIGQVEIWEHMCSFTYSVALKSAVELRIADIINRYDKPISLSKIVENIENAASPDISLLQRIMRVLVRRKIFSAEKSESNGETLFGLTRASKWILLDGTNMTLAPMLLLENHPLHLSPCHYVSDIIREGTKNGTAFFRCHGHEQFEMTGLDPEYNKLFNEGMVCTARIVSQAVISGYKDGFNKIQTLVDVGGGIGGSLSEIVRAYPHIKAINFDLPHVIGTAPEYDGITHVGGDMFVSIPNADAVYMKWILHDWSDEHCIKILKNCRKAIPEKTGKVIIVDHILEPEGNELFSNTGFAFDMMLLAHNAGGKERTEENWKWLFNETGFPHYNIIKIKALPSIIEAFPI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1239 366 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 15 365 - -
Lal5g1239 366 PIRSF O-mtase 2 366 IPR016461 GO:0008168
Lal5g1239 366 Pfam O-methyltransferase domain 140 346 IPR001077 GO:0008171
Lal5g1239 366 SUPERFAMILY "Winged helix" DNA-binding domain 17 114 IPR036390 -
Lal5g1239 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 365 IPR016461 GO:0008168
Lal5g1239 366 Gene3D Vaccinia Virus protein VP39 116 366 IPR029063 -
Lal5g1239 366 PANTHER O-METHYLTRANSFERASE 15 365 IPR016461 GO:0008168
Lal5g1239 366 CDD AdoMet_MTases 205 303 - -
Lal5g1239 366 Pfam Dimerisation domain 38 86 IPR012967 GO:0046983
Lal5g1239 366 Gene3D - 9 113 IPR036388 -
Lal5g1239 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 363 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1239 Lal-Chr5 15141139 15143990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1239 1 352 Monolignol Biosynthesis Gene Families AT5G54160 37.640 7.86e-82 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1239 K22588 - gmx:100800801 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1239 5 15141139 15143990 Lal11g0215 11 1579432 1583308 LSH