Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1223 ATGCCATATGCTATATTAATCTCCATCATCACACTATTCTCCATTCTCATTTCACCAACCACCGCTCTCTACTCTTCCCCATCTCCTCCAGCCGCCCCATTCTCCTCCTCCTCCGCCCCACTCCCCTCTCCCACCACCGAATGGCTCTCCGCCCACGCCACCTACTACACTCCCGCCGACCCCATCACCACCATCGCCGGCGCGTGTGGCTACGGCGACCTCCTCAAACAACGCTACGGCATGACTGCTGTCAGCCTCAGCGATGCCCTCTTCCAACGCGGCCAGATCTGCGGCGCGTGCTTTGAACTGCGGTGTGCTGAGGAGGAAGCCACTTTCGACCGACGGTGGTGTATCCCTGGCACCTCTGTCGTTGTAACTGGAACTAATTTCTGCGCCCCGAACTATGGCGTTGACGCTGAGAGTGGTGGTGGGAAGTGTAACGAACCGAAGCAACACTTTGTGGTTCCAATTGAAACGTTTGAGAAGATTGCAATCTGGAATGCTGGTAACATGGCCGTACAGTATCGCAGGGTAAAGTGCAGAAGGGAAGGAGGAATCCGATATACGATAAGTGGTTCTGGCATCTTCATTTCGGTGCTAATTAGCAATGTGGGTGGCACTGGAGACATGGTTGGTGTAAAGGTTAAGGGTTCAAGAACTGGTTGGCTTCCAATGGGTCGAAATTGGGGACAAAATTGGCATGTAAGTGCATTACTACAGAATCAACCTCTTTCATTTGAGGTTACTAGTAGTGATGGGATAACAGTTACATCTTACAATGTTGCTCCTAAGGATTGGAGCTTTGGCCAAACCTTTGAAGGCAAGCAATTTGAGTCTTGA 840 0.5131 MPYAILISIITLFSILISPTTALYSSPSPPAAPFSSSSAPLPSPTTEWLSAHATYYTPADPITTIAGACGYGDLLKQRYGMTAVSLSDALFQRGQICGACFELRCAEEEATFDRRWCIPGTSVVVTGTNFCAPNYGVDAESGGGKCNEPKQHFVVPIETFEKIAIWNAGNMAVQYRRVKCRREGGIRYTISGSGIFISVLISNVGGTGDMVGVKVKGSRTGWLPMGRNWGQNWHVSALLQNQPLSFEVTSSDGITVTSYNVAPKDWSFGQTFEGKQFES 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1223 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 185 IPR007112 -
Lal5g1223 279 PANTHER EXPANSIN-A13 33 278 - -
Lal5g1223 279 SUPERFAMILY Barwin-like endoglucanases 47 203 IPR036908 -
Lal5g1223 279 PANTHER EXPANSIN-A15 33 278 IPR002963 GO:0009664
Lal5g1223 279 PRINTS Expansin signature 78 92 IPR002963 GO:0009664
Lal5g1223 279 PRINTS Expansin signature 143 160 IPR002963 GO:0009664
Lal5g1223 279 PRINTS Expansin signature 160 173 IPR002963 GO:0009664
Lal5g1223 279 PRINTS Expansin signature 184 196 IPR002963 GO:0009664
Lal5g1223 279 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Lal5g1223 279 PRINTS Expansin signature 231 252 IPR002963 GO:0009664
Lal5g1223 279 PRINTS Expansin signature 260 276 IPR002963 GO:0009664
Lal5g1223 279 Gene3D - 186 277 IPR036749 -
Lal5g1223 279 Pfam Expansin C-terminal domain 186 263 IPR007117 -
Lal5g1223 279 SMART dpbb_1 83 175 IPR007112 -
Lal5g1223 279 SUPERFAMILY PHL pollen allergen 182 274 IPR036749 -
Lal5g1223 279 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Lal5g1223 279 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Lal5g1223 279 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Lal5g1223 279 PRINTS Expansin/Lol pI family signature 168 184 IPR007118 GO:0005576
Lal5g1223 279 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Lal5g1223 279 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Lal5g1223 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 195 274 IPR007117 -
Lal5g1223 279 Gene3D - 34 181 IPR036908 -
Lal5g1223 279 Pfam Lytic transglycolase 85 175 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1223 Lal-Chr5 15002242 15005273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1223 47 279 Expansin Gene Family AT3G03220 68.670 4.56e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1223 - - adu:107481013 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1223 5 15002242 15005273 Lal6g0327 6 2098537 2100524 PCT
Lal6g0327 6 2098537 2100524 Lal5g1223 5 15002242 15005273 PCT