Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1221 ATGACAATGGGTGAAGAATCCTTAGCACCATTCACATTTGACAGAACTGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTTAAATGTGGCCGTCGAGGAAAACCGAAGCTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATTTGGTACTCCGGGCAACAAGAAAAGCATTTGCGGTTGAGTGCAGTTACTGAAATTATTCAAGGGCAGGGTAATATAAGGTCCAATGGGCATGAGGATCCTGGAAAGGATGGCCATTCATTTTCACTAATCTATGCGAACGGTGAACGCTCTCTTGATCTGATATGCAAGGACAAAGCACAGGTTGCTATATGGTCTGTTGGCTTGAAAGCAGTGATTTCTAGGTGCCAGAATCCTAAACCTTTTAGTAGTTTAAGAAGCTGTAAAGGGGTTCAGAGTTGTGTTAGTAGTCCAGCCGGAATCTTCCGAAGAAAGAAAAATCTTGGCCTTCTCGATGAAACTTCTCAATTTACACAGGTACATAGCGTATGTGCAAGTCCTACTTTGTCACTATCAGAAAGGTGTTTCTCTGATGGATTTTCGTATACATCTGATAACATTTATTCTAGAACTCATGCCGTAATAGATAATTCAGTCCCGAGTTCGCCATACATTGATCCAGATATTCCTAGTAAGGTTGAATCACCACATCTTCTCAAGGAATCCAAGAAGATTTTGTCCTATAGGCCTCTGATGCCTCCGCCCTCCCCGCGTACACGAAATAACAATGTATTAAAGGATGTGATGGTATGGGGGGGAGGGATTGGAGGTTCTTTAGGGATCGGGAATGAAAGGTTTGTCGACCAACATGGAATTTATTCTTTAGTTCCGAAATTACTGGAATCGACTATGATGTTAGATGTACAAAATATAGCTCTAGGAGGAAAACATGCTGTTTTGGTTACAAAACAAGGGGAAGTGTTCTGCTGGGGTCAAGGGAAGTGGGGAAGGTTGGGGCAAAAAATTGATATTGACATTAGCTCTCCGAAAATAGTTGATTCTCTTAACAGTATCCATATTAAAGATGTTGCATGCGGTGAGTACCATACGTGTGCTTTGACTGATTCCGGTGAAGTATATACATGGGGAAATGATGCTTTTAGTGTAGATTTGGCTGATGAATGGAGAAATAGAAGTCAGTGGATCCCACATAAACTTTCTGGTCCTTTAGATGGTATTAGTATTTCAAGTGTTGCTTGTGGGGAATGGCATACTGCAATTGTCTCCATCTGTGGGCGATTATTTACATATGGAGAAGGTACATTTGGCGTTCTTGGCCACGGTGATGCTAGGAGTTTTTCTCATCCGAAAGAAGTCGATTCTCTGAGTGGTCTAAGGGTGAGGTCTGTTGCTTGTGGATCGTGGCATACAGCCGCTATTGTAGAAGTCATTGCCGACCATTTTAGGTATAATACTGCGAGTGGAAAGCTTTTTACATGGGGTGATGGAGATGAAGGGAGGCTCGGTCATGCTGATAATAGAAGCAAGCTTATGCCAACATGTGTTTCGCAGCTTGTTGATTATGATTTTGTTCAAGTGTCTTGTGGAAGAATGTTGACTGTTGCGCTTACTACTATGGGCAAAGTTTTTGCAATGGGAAGTGCAAAATTTGGACAATTGGGAAATCCACATGCAAGGGACAAAGCAGTTATGGTTGAAGGACTTCTGAAAAAAGAGTTTGTTAAAATGATATCATGCGGTTCATATCATGTTGCTGTTTTGACTTCTGCAGGGAGTGTCTATACATGGGGCAAGGGCGAAAATGGTCAACTTGGGCTAGGAAATACCGAAGACAGATACACACCTTCTTTTGTTGAAACACTAAGAGACAGACAGGTAGATACTATAACTTGTGGCCCAAGCTTCACAACCGCAATCTGTTTACACAAACCTATTTCAATCAGTGACCAGTCAGCATGTAGTAGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGTTATAACTGTGGTCTTCTATTCTGCCATTCTTGTAGTAGTAAAAAGGCTATAAATGCATCACTAGCCCCAAGTAAGTGCAAGGCTTTTCGGGTTTGTGATCGGTGCTTCGATAAACCTCAAGGAAGTACGTATTCTGGAATGGCATCAAAGTCTGGAAGTTACAACACTCAACAGGTACTGAAGCATCAAAACAAAATTCCCGATCTAACTGAAGGTAGGGGAGAAACAACCGTAGCACAGAGTGCGATGTCTCTCGGTCAATCATGTTACAGGAAAAGCATGCCGAGTGGACGGAAGGACTGGAAAAACCAACAAGAAAGCCAGCAGCATTTAGAAGATAATTCTTCTGTGTTGGGTGGAGTATCGCGATGGGGGCAAGTTCCATGCCCTGATTCATTTAACATCAATTGTACAGAACGTTCAGTTATGTGTGTTTCTTCATCCAAAAATAGATTAGCCACTGTTTCTATGGAAATAGAATCTGCTGTATGCAACTTCCCTGTGGCTGAGACAGATGCAACAAAGTCCAATAAGATGCTAATAGAAGAAGTTCAACGGCTGGGAGCTGAGGCTAGAAGACTTGAAGAGCAGATTGAGCTCAAAAACCAAAAATTACAAGAGTGTCAACAAAAAGTCGAGGAGAGTTGGCTCGTGGCTAAGGAGGAAGCTGCTAAGAGTAAGGCAGCAAAAGAGGTTATAAAAGCTTTGGCATTAAGGCTTCATACATTATCAGGAAAAGATAATGCTGGACAAGACGAAAAGGTTATACATGAATGTCTGCCTAATTTGGCTCACATACAAACAGATATCAAGAGTCCGAAAGTTAGCAACATCGACAGTCTATCAAATTCCCCTATAGTATTTTCCGATACACAAAAATCCAAATTCGGGAGAACTATGGTCCTTAAAAATGGTAAATTATCGGAGAACTCGAACTTCAATAGAGCAGAACCGCAAGAAGACAGCAACAGCTTGAAGGCTGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTAACAACCTTATCATGTGGCAAAAAGGGCCTTAAGCGAGTGAGATTTAGCCGGAAACGATTCTCGGAGAAGGAAGCCGAAAAATGGTGGGAAGGGAATCAAGCCAAAGTCTACCATAAGTATGATATTGAAGGGTATAATACTAGACAAAGTTGA 3183 0.4169 MTMGEESLAPFTFDRTVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDERNLIWYSGQQEKHLRLSAVTEIIQGQGNIRSNGHEDPGKDGHSFSLIYANGERSLDLICKDKAQVAIWSVGLKAVISRCQNPKPFSSLRSCKGVQSCVSSPAGIFRRKKNLGLLDETSQFTQVHSVCASPTLSLSERCFSDGFSYTSDNIYSRTHAVIDNSVPSSPYIDPDIPSKVESPHLLKESKKILSYRPLMPPPSPRTRNNNVLKDVMVWGGGIGGSLGIGNERFVDQHGIYSLVPKLLESTMMLDVQNIALGGKHAVLVTKQGEVFCWGQGKWGRLGQKIDIDISSPKIVDSLNSIHIKDVACGEYHTCALTDSGEVYTWGNDAFSVDLADEWRNRSQWIPHKLSGPLDGISISSVACGEWHTAIVSICGRLFTYGEGTFGVLGHGDARSFSHPKEVDSLSGLRVRSVACGSWHTAAIVEVIADHFRYNTASGKLFTWGDGDEGRLGHADNRSKLMPTCVSQLVDYDFVQVSCGRMLTVALTTMGKVFAMGSAKFGQLGNPHARDKAVMVEGLLKKEFVKMISCGSYHVAVLTSAGSVYTWGKGENGQLGLGNTEDRYTPSFVETLRDRQVDTITCGPSFTTAICLHKPISISDQSACSSCRLPFGFTRKKHNCYNCGLLFCHSCSSKKAINASLAPSKCKAFRVCDRCFDKPQGSTYSGMASKSGSYNTQQVLKHQNKIPDLTEGRGETTVAQSAMSLGQSCYRKSMPSGRKDWKNQQESQQHLEDNSSVLGGVSRWGQVPCPDSFNINCTERSVMCVSSSKNRLATVSMEIESAVCNFPVAETDATKSNKMLIEEVQRLGAEARRLEEQIELKNQKLQECQQKVEESWLVAKEEAAKSKAAKEVIKALALRLHTLSGKDNAGQDEKVIHECLPNLAHIQTDIKSPKVSNIDSLSNSPIVFSDTQKSKFGRTMVLKNGKLSENSNFNRAEPQEDSNSLKAEWVEQYEPGVYITLTTLSCGKKGLKRVRFSRKRFSEKEAEKWWEGNQAKVYHKYDIEGYNTRQS 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1221 1060 PANTHER F12P19.9 PROTEIN 16 1052 - -
Lal5g1221 1060 Gene3D - 251 382 IPR009091 -
Lal5g1221 1060 Gene3D - 477 643 IPR009091 -
Lal5g1221 1060 Gene3D - 383 476 IPR009091 -
Lal5g1221 1060 Coils Coil 846 880 - -
Lal5g1221 1060 Pfam FYVE zinc finger 649 707 IPR000306 GO:0046872
Lal5g1221 1060 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 463 473 IPR000408 -
Lal5g1221 1060 SMART fyve_4 641 710 IPR000306 GO:0046872
Lal5g1221 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 425 476 IPR000408 -
Lal5g1221 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 424 IPR000408 -
Lal5g1221 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 318 366 IPR000408 -
Lal5g1221 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 540 587 IPR000408 -
Lal5g1221 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 487 536 IPR000408 -
Lal5g1221 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 591 639 IPR000408 -
Lal5g1221 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 369 420 IPR000408 -
Lal5g1221 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 425 473 IPR000408 -
Lal5g1221 1060 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 647 709 IPR017455 -
Lal5g1221 1060 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1052 - -
Lal5g1221 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 488 539 IPR000408 -
Lal5g1221 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 718 IPR013083 -
Lal5g1221 1060 PRINTS Chromosome condensation regulator RCC1 signature 260 276 IPR000408 -
Lal5g1221 1060 PRINTS Chromosome condensation regulator RCC1 signature 320 336 IPR000408 -
Lal5g1221 1060 PRINTS Chromosome condensation regulator RCC1 signature 370 386 IPR000408 -
Lal5g1221 1060 PRINTS Chromosome condensation regulator RCC1 signature 411 427 IPR000408 -
Lal5g1221 1060 PRINTS Chromosome condensation regulator RCC1 signature 427 441 IPR000408 -
Lal5g1221 1060 PRINTS Chromosome condensation regulator RCC1 signature 529 547 IPR000408 -
Lal5g1221 1060 PRINTS Chromosome condensation regulator RCC1 signature 586 607 IPR000408 -
Lal5g1221 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Lal5g1221 1060 CDD PH_PLC_plant-like 15 127 - -
Lal5g1221 1060 Gene3D - 16 133 IPR011993 -
Lal5g1221 1060 SUPERFAMILY RCC1/BLIP-II 259 643 IPR009091 -
Lal5g1221 1060 SUPERFAMILY FYVE/PHD zinc finger 648 711 IPR011011 -
Lal5g1221 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 591 642 IPR000408 -
Lal5g1221 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 540 590 IPR000408 -
Lal5g1221 1060 Pfam Transcription factor regulating root and shoot growth via Pin3 995 1050 IPR013591 -
Lal5g1221 1060 ProSiteProfiles BRX domain profile. 996 1051 IPR013591 -
Lal5g1221 1060 SUPERFAMILY PH domain-like 16 126 - -
Lal5g1221 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 259 317 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1221 Lal-Chr5 14969181 14976759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1221 997 1056 Major Intrinsic Protein MIP AT1G31880 43.333 3.16e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1221 - - adu:107481014 1639.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1221 5 14969181 14976759 Lal3g0502 3 3594524 3602567 LSH