Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1220 ATGGCACCGGTTTCATTGCCTCCTGGGTTTAGGTTCCACCCCACTGACGAAGAACTTGTTGCATATTACCTCAAAAGAAAGATCAATGGCCGCAAGATTGACTTGGAGATCATCCCAGAAGTTGATCTTTACAAGTGTGAACCATGGGATTTGCCAGGGAAGTCACTGTTACCTGGGAAAGATTTGGAGTGGTATTTCTTCAGCCCACGAGACAGGAAGTATCCAAATGGATCAAGAACAAATCGTGCAACGAAATCTGGATATTGGAAGGCCACAGGGAAAGATCGAAAGGTGAATTCACAGAGTAGTGCAGTGGGAATGAAGAAAACCCTAGTTTACTACAGAGGTAGGGCACCACATGGGACTCGCACTGGTTGGGTTATGCATGAGTATCGTCTTCATGAGAGGGAATGTGAAATCCGTAATGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTGAAGAAGAGTTTAGTGATCACTCCAAAAATTGAAGATCACTATGCTAATGTCACCAGCCATGTAAATCACCTAACAAGTGATCAATCAGCTTCAAGAATCGAACTATATTCTGAAGGAAGAGAAGAAATTTTAGAGAGCTCAAATTATATGATGCCATGGGAAATGCACCCACCCCAAAACATAGGTGGGACTTTGGTCAATAATATCAATGGTGGAACAATGGACAATGGGAAATGGTCTCATCACTTCTCATCAGAAGACCCATTACTCAATCTTCCAACATCTTCATTTCCCAATTATGAAGCCTTACCTTACCATCCATCAAAGGTGACACAAGCATCATGTGAAAGCAGAAATGAAATAGATATCTTGCAAGAAATTCTTTCAGTTGCACAAGCTCAGGAATTAATGAATCATCAATCCAATAATTCACATGCATTAAGTGGCAATGAGAATTATTATGCCCCACATAATCAAAATGATTTTACTTTTATGGTTGGTACTAATGACAATCACACAAATGATTTGAACTACATGAAATATGTTCACCATTCATGGGAAGATCAAAACACAAGATCAATAGAGATTGGAGATTTTGATGATGAATTCAAGGGAGAGAGGATGGTAGAGAACTTAAGATGGGTTGGAATGTCAAGCAAAAATATAGAGAAGAGCTTTATGGAAGAGCAAAAGGTTGTTCCGATTCAGCATATTTCAAGCATTCAAATAAACAAGGAAGAAAATGATCTACAAGAATCTGATCAACAAAATTGCAACAAAGAATTCAATGACACTGATATCAACTATTTCTCATTAGGGTTCATCAATGATAATGACCCCAATGAGAACTTCATGGATAAAAGTAACATTGATTATTCAAATTCTACAGGCTTTGAAGTTGTTGAGGAAACCAAGATGTTTGTTTCAAATGGTCCAGTAACTGAAACATTCTTTCACCAAATAGTTCCTTCACAAACTGTCAAAGTTCAACTCAATCCTATAATGGCAAATAATCATTCTATAGAGAATGCTGAGACAAAGATGAAGTTGAAGAAAAAATGGGTTTTCTATAAGAAGTTCAAGGCAATGGGAAATGCTATTGTACTCATCTTTGCACTTATGCTTATGCATTGTCTTTATTTAAAGGAGCAAGTGAAAAATTGGGAGCTAAACCCTAAGGGTGTGAAAATGAAATACTGCAGTAACAACATGAAGATATTAATGACACAACAAGCTGAGAATATCAAATGGAATGAGGAAGAAAATATTTGGCTCGTTGGTATCAAAAGTGGGAAAGGGTTTAGTGTGTTCTTGAAAAAGATTGGCATTTTTCTCACCATATCTTTTGCTTTATGTACCATGTGGGTTAACCACATCATAGTTAATCCTTAA 1854 0.3754 MAPVSLPPGFRFHPTDEELVAYYLKRKINGRKIDLEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSSAVGMKKTLVYYRGRAPHGTRTGWVMHEYRLHERECEIRNGLQDAYALCRVLKKSLVITPKIEDHYANVTSHVNHLTSDQSASRIELYSEGREEILESSNYMMPWEMHPPQNIGGTLVNNINGGTMDNGKWSHHFSSEDPLLNLPTSSFPNYEALPYHPSKVTQASCESRNEIDILQEILSVAQAQELMNHQSNNSHALSGNENYYAPHNQNDFTFMVGTNDNHTNDLNYMKYVHHSWEDQNTRSIEIGDFDDEFKGERMVENLRWVGMSSKNIEKSFMEEQKVVPIQHISSIQINKEENDLQESDQQNCNKEFNDTDINYFSLGFINDNDPNENFMDKSNIDYSNSTGFEVVEETKMFVSNGPVTETFFHQIVPSQTVKVQLNPIMANNHSIENAETKMKLKKKWVFYKKFKAMGNAIVLIFALMLMHCLYLKEQVKNWELNPKGVKMKYCSNNMKILMTQQAENIKWNEEENIWLVGIKSGKGFSVFLKKIGIFLTISFALCTMWVNHIIVNP 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1220 617 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Lal5g1220 617 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 265 - -
Lal5g1220 617 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Lal5g1220 617 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Lal5g1220 617 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 265 - -
Lal5g1220 617 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1220 Lal-Chr5 14959641 14965336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1220 1 608 NAC Transcription Factor Family AT1G65910 43.458 2.34e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal5g1220 NAM 1.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1220 - - gmx:100818019 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1220 5 14959641 14965336 Lal3g0503 3 3604695 3610030 LSH
Lal5g1220 5 14959641 14965336 Lal11g0601 11 4937947 4943904 LSH