Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1217 ATGGTTCTATCCAAAACAATATCAGATAGCGATGTTTCTGTTCATTCAACCTTTGCTTCTCGCTATGTCAGAACCTCCCTTCCCAGGTTCAGGATGCCAGAAGAATCAATACCAAAGGAAGCAGCATACCAAATCATAAACGATGAGTTGATGCTTGATGGGAACCCAAGGTTGAATCTTGCATCATTTGTAACAACATGGATGGAACCAGAGTGTGATAAACTTATCATGGCTTCCATTAACAAGAACTACGTTGACATGGATGAATACCCTGTTACCACTGAGCTTCAGAATCGATGTGTTAACATGATAGCTCATCTTTTTAATGCACCTCTTCAAGAGTCTGAGACTGCAATTGGTGTTGGCACGGTTGGTTCATCAGAGGCAATAATGTTGGCTGGATTAGCATTCAAAAGAAAGTGGCAAAAGAGAAGAAAAGAAGAAGGAAAACCTTATGACAAACCCAACATTGTTACTGGAGCCAATGTTCAAGTTTGCTGGGAAAAATTTGCAAGGTACTTTGAAGTGGAGCTGAAAGAGGTGAAGTTGAGTGATGGATACTATGTAATGAACCCTGAAAAAGCTGTGGAAATGGTTGATGAAAACACCATTTGTGTTGCTGCTATACTTGGTTCTACACTAAATGGAGAATTTGAAGATGTCAAGCGCTTAAATGATCTTCTAATTGAGAAGAATAAGGAAACTGGGTGGGATACTCCTATTCATGTGGATGCAGCCAGTGGTGGGTTCATTGCCCCATTTATTTATCCAGAGCTTGAGTGGGACTTTCGTTTACCACTTGTGAAAAGCATCAATGTTAGTGGCCATAAATATGGTCTAGTCTATGCTGGAATTGGTTGGGTTATTTGGAGAAGCAAAGATGATTTACCTGATGAACTCATTTTCCACATCAATTATCTTGGAACTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAATTATTGCTCAATACTATCAACTAATTCGCCTTGGTTATGAGGGATACAAAAATGTGATGGAAAATTGTAGAGACAACATGTTAGTACTGAAGGAGGGGCTTGAACAAACAGGGAGATTTCAAATTGTGTCAAAAGACAATGGTGTTCCTTTGGTGGCCTTTAGTTTGAAGGATCACAGCCACTTTGATGAATTTCAAATCTCAGACTTCTTGAGGCGCTTTGGGTGGATAGTGCCAGCATATACCATGCCACCAGATGCTCAACATGTGACCGTGCTTCGTGTCGTTATTAGAGAGGATTTCTCGAGGACCCTCGCGGAACGCCTCGTGGTTGATATAGAAAAAGTTCTGCATGATCTTGACTCATTTCCATCAAAGGTGGTGGCTAGCACCAGTGTAACATCAGTCACAGAAAGTGTAGAAAACAATGGCAAAGCTAAGAAGAGTGATATTGAGACTCAAAGGGAAATTACTGCAGTTTGGAAGAAGTTTGTTTCAGAGAGGAAGAAGATCAATGACAAGATGAGTGGTGTTTGTTAA 1512 0.4074 MVLSKTISDSDVSVHSTFASRYVRTSLPRFRMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLQESETAIGVGTVGSSEAIMLAGLAFKRKWQKRRKEEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYYVMNPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKDDLPDELIFHINYLGTDQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYKNVMENCRDNMLVLKEGLEQTGRFQIVSKDNGVPLVAFSLKDHSHFDEFQISDFLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVVDIEKVLHDLDSFPSKVVASTSVTSVTESVENNGKAKKSDIETQREITAVWKKFVSERKKINDKMSGVC 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1217 503 Gene3D - 66 360 IPR015421 GO:0003824
Lal5g1217 503 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Lal5g1217 503 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lal5g1217 503 CDD DOPA_deC_like 59 439 - -
Lal5g1217 503 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lal5g1217 503 PANTHER GLUTAMATE DECARBOXYLASE 1 503 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lal5g1217 503 PANTHER GLUTAMATE DECARBOXYLASE 1 503 - -
Lal5g1217 503 Gene3D - 361 448 - -
Lal5g1217 503 Gene3D - 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1217 Lal-Chr5 14929793 14938623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1217 1 503 Calmodulin-binding Proteins AT5G17330 83.071 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1217 K01580 - gmx:100796533 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1217 5 14929793 14938623 Lal3g0507 3 3639523 3644477 LSH