Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1215 ATGCCCTTAGAGGGGATTTTCATTGAAACCACTTCAACTACTACACCTGATCTTTCCCTTCATATAAGCCCTCCAAGCACCACTTCTTCCTCTTCTTCTTTGATTTGCAATAACACCACAACCCAAGTAAGTGGTGGTGGCACCAATTATGAAGCTCACAATTCATCCCAAACCACTATTTTTTCTTCAAGAACTGTGCCTCAAGCTCACACTGAGCTCTCTCTTGGAAGAAATTTCAGTGGTGGAGGAACATCTCTTCAGGAAACACCACCACACAACAACAACAACAACAACAAGAACAACCCTTATTATCAAAACCACCAATCTCATTTACATCAACTTCACCATCAAATCTCTAACACTAGCAGTAGTGGTGGTGCTACAACAACAAGTACTACAAGTTCTACATGGTTGAATAACATTAATTATGGGGTTTCCATGCTTGATGTGTCATCTGAAGGGTTGAGACCAATCAAGGGAATTCCAGTGTATCACAACCGTTCTTTCCCTTTTCTCCCCGTAGAGCATACAAGAGACATGGATCATCATCATCCCAAGATGTGTTTATATCATCACATGCCTTCATATCCTTCTTTATCTTCTTCTTCTCCTTCCTCTTCTTCCCCTACACCCTACTTCGCCGCCGCCACGCCTGGTTTGGATCCCATGTCTTTGTTAAACTCTGGCACCCCCAACGGCCCCGCGGCGGCATATAGGGCTGCTGCAGCCACAATGTTTAATGGGATTTCCGGTGAGGCTTTCAAATCTCATCATCCATTGCACCACCACTCACACTATGGGGTTGGACCCTCTCATAATGAGGCTACTTCAGCAGGGTTGATGAGATCAAGGTTCTTACCTAAATTACCAACAAAAAGGAGCATGAGAGCACCTAGAATGAGATGGACAAGCACCCTCCATGCTAGATTTGTTCATGCTGTTGAACTTCTTGGTGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTGGAGCTCATGGATGTGAAGGATCTTACATTAGCTCATGTAAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTAACAAACCTCATGCTTCTTCAGGTCTTTCAGATGGATCCGGAGAGGATGACATGTCTCCTATAGGCAGCAGCGGTAGCGGCGGTCCACGTCAATTTCCGGATCAAAGAAGCCTACCGGATCGGCTGGTGCAACAAGACATGGACTACACCTCCACTACCACCACCACTCTTTGGAGTAACTCTTCAAGTAGAGAGCCATGGCCTCAAACTAGTGCTAATGACATAGGTGGTTTCAGACCACCTATCTTCCAGTCACAACCATTATCAGGAGGGCATCAAATTCAGGAATGTGATTCAACCCAAGTCAAGAATAGTTTATCAGGGTCTAATTTAGAGTGCAAGAATCCAAGCTTGGAATTCACATTAGGTAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1467 0.4472 MPLEGIFIETTSTTTPDLSLHISPPSTTSSSSSLICNNTTTQVSGGGTNYEAHNSSQTTIFSSRTVPQAHTELSLGRNFSGGGTSLQETPPHNNNNNNKNNPYYQNHQSHLHQLHHQISNTSSSGGATTTSTTSSTWLNNINYGVSMLDVSSEGLRPIKGIPVYHNRSFPFLPVEHTRDMDHHHPKMCLYHHMPSYPSLSSSSPSSSSPTPYFAAATPGLDPMSLLNSGTPNGPAAAYRAAAATMFNGISGEAFKSHHPLHHHSHYGVGPSHNEATSAGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKPHASSGLSDGSGEDDMSPIGSSGSGGPRQFPDQRSLPDRLVQQDMDYTSTTTTTLWSNSSSREPWPQTSANDIGGFRPPIFQSQPLSGGHQIQECDSTQVKNSLSGSNLECKNPSLEFTLGRPDWNGKGQA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1215 488 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 488 - -
Lal5g1215 488 MobiDBLite consensus disorder prediction 408 430 - -
Lal5g1215 488 MobiDBLite consensus disorder prediction 459 488 - -
Lal5g1215 488 MobiDBLite consensus disorder prediction 408 425 - -
Lal5g1215 488 Gene3D - 297 354 - -
Lal5g1215 488 MobiDBLite consensus disorder prediction 74 135 - -
Lal5g1215 488 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 298 351 IPR006447 GO:0003677
Lal5g1215 488 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 488 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lal5g1215 488 MobiDBLite consensus disorder prediction 351 391 - -
Lal5g1215 488 MobiDBLite consensus disorder prediction 372 386 - -
Lal5g1215 488 SUPERFAMILY Homeodomain-like 295 351 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1215 Lal-Chr5 14880948 14886814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1215 156 485 G2-like Transcription Factor Family AT5G16560 46.779 5.16e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal5g1215 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1215 - - ccaj:109796302 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0510 3 3710986 3717067 Lal5g1215 5 14880948 14886814 LSH
Lal5g1215 5 14880948 14886814 Lal22g0294 22 1858364 1864015 PCT
Lal5g1215 5 14880948 14886814 Lal6g0320 6 2047733 2052949 PCT
Lal22g0294 22 1858364 1864015 Lal5g1215 5 14880948 14886814 PCT
Lal6g0320 6 2047733 2052949 Lal5g1215 5 14880948 14886814 PCT