Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1208 ATGAAACCAATCTTTGATCTTGAAGTGGAGGCCACAGCAGAATATGAATCTGATGTTATCAGCCATGTTGCTTTCAATATTCATGAAACCACTAACTCTTCCAATGTCACAAATCCAATAGAGATTCATCCTCTTTCAGATGCTATCTCACTTGAGTTAACTCTCAATTTCAACAGTAATGAGGTAGGAGCAAGAGACTTAATAGGACTCTCATTCTCAAGTACTAGTGAGAGCAGCAATGAACTTGCTTCACAAACTACTGCACCAACCATTCCAAGGCTTTTCCCCTGCACTTACTGTCAGCGCAAATTCTATAGCTCGCAAGCACTCGGTGGCCACCAAAATGCACACAAGAGAGAAAGAACATCAGCGAAGCGAGCAATGCGAATGGGCCTCATTTCTGAGAGGTATGCTAGTTTAGCATCTCTCCCTCTGCATGGTTCTTTCGGTTCCTTAGGAATAAAGACACACTCTTCGCTGCACCGTGGATTTTCGCCATCAATAAGGCCCACTGAGATAAAAAGCAATGCAAGAGTTGAACAAGGATATCTCAGTCTTCCAATATTCTTGGAGGATGATGAGGCAGAACTGTTGTGGCCTGGTAGCTTCCATCAGGTTACTGAGAAAAGTGATTCTCATCAAAATTTCATATTGACTGCTGGAAGTTCGAGTTTTAGTTTTTCTGAGTTGCATCCACCGGTTGATATAGAGAAATCGGCACCCGAATTAACATTGAAACTTTGA 744 0.422 MKPIFDLEVEATAEYESDVISHVAFNIHETTNSSNVTNPIEIHPLSDAISLELTLNFNSNEVGARDLIGLSFSSTSESSNELASQTTAPTIPRLFPCTYCQRKFYSSQALGGHQNAHKRERTSAKRAMRMGLISERYASLASLPLHGSFGSLGIKTHSSLHRGFSPSIRPTEIKSNARVEQGYLSLPIFLEDDEAELLWPGSFHQVTEKSDSHQNFILTAGSSSFSFSELHPPVDIEKSAPELTLKL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1208 247 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 247 - -
Lal5g1208 247 Gene3D Classic Zinc Finger 71 142 - -
Lal5g1208 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Lal5g1208 247 PANTHER ZINC FINGER PROTEIN JAGGED 1 247 IPR045320 GO:0003700
Lal5g1208 247 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Lal5g1208 247 SUPERFAMILY beta-beta-alpha zinc fingers 93 122 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1208 Lal-Chr5 14853065 14853808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1208 77 247 C2H2 Transcription Factor Family AT1G66140 47.739 3.10e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal5g1208 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1208 - - lang:109345142 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1208 5 14853065 14853808 Lal6g0318 6 2037300 2039071 PCT
Lal6g0318 6 2037300 2039071 Lal5g1208 5 14853065 14853808 PCT