Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1207 ATGACTAGAAAGAAGGTGAAACTTGCATTCATAGTCAATGATGCATCAAGAAAGGCAACATATAAGAAAAGGAAGAAGGGTCTAATGAAGAAAGTTGGTGAACTAAGCACCCTTTGTGGAATTGATGCATGTGCTATAATTTATAGTCCCTATGATCCTCAACCTGAGGTTTGGCCATCACCGATAGGAGTACAAAGGGTTCTTGCAAAGTTTAGGAGAATGCCGGAATTGGAGCAAAGCAAGAAAATGGTGAACCAAGATAGTTTTTTGAGACAGAGGATCCTGAAGACGAAAGAGCAAGTTAAGAAGCAGAGTAAAGATAATAGGGAGAAGGAGATTACTCAGGTCATGTTTCAATGCCTTAGTGCAGGTAAAATTCTACCCAATATAAGCATGGTTGATTTGAATGATTTGGCTTGGTTGATTGATCAAAACTTGAAGGACATTAATAGAAGGGTCGAAATATTGACCAAGAAGGCTCAAAGCCAAGCTCAAATTGTTGCACCTTTGGTGAGTGATGTAGCAGCTAAGATTGAAGAGAAGGAAGAAGGGTGTCATGGAAATGGGTTGGATTTGGATATGAATATTGATGTAATGGAGAAGCAGAATTGGTTCACCAATTTGTTGAATAGTGGTGGTGGTGATGAGGCATTGCCATTTGGAGATGTTAACCATCAAAATGGTTTTTGGCCTAACCCATTTTTCCAATGA 711 0.3924 MTRKKVKLAFIVNDASRKATYKKRKKGLMKKVGELSTLCGIDACAIIYSPYDPQPEVWPSPIGVQRVLAKFRRMPELEQSKKMVNQDSFLRQRILKTKEQVKKQSKDNREKEITQVMFQCLSAGKILPNISMVDLNDLAWLIDQNLKDINRRVEILTKKAQSQAQIVAPLVSDVAAKIEEKEEGCHGNGLDLDMNIDVMEKQNWFTNLLNSGGGDEALPFGDVNHQNGFWPNPFFQ 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1207 236 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lal5g1207 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 - -
Lal5g1207 236 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lal5g1207 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal5g1207 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal5g1207 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal5g1207 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 181 - -
Lal5g1207 236 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal5g1207 236 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lal5g1207 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1207 Lal-Chr5 14844972 14845682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1207 1 156 Type I MADS-box Gene Family AT5G48670 66.667 7.82e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal5g1207 SRF-TF 1.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1207 - - gmx:100813231 379.022