Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1197 ATGGGAAGACAACCATGTTGTGACAAAGTTGGATTGAAGAGGGGGCCATGGAGTGCAGAAGAAGATAAGAAGCTTATCAACTTCATCCTCTGTAATGGCCAATTTTGCTGGAGAACTGTACCTAAGTTAGCAGGTCTTTTAAGGTGTGGGAAAAGTTGCAGGCTTAGATGGACAAATTACCTGAGGCCAGACCTCAAAAGAGGCCTTCTATCAGAAGATGAAGAGAAAATGGTCATTGACCTCCATGCTCAACTTGGCAATAGATGGTCTAAGATTGCTTCTAATCTACCTGGAAGAACCGATAATGAAATCAAAAATCACTGGAATACTCATATAAAGAAAAAACTCAAGAAAATCGGAATTGATCCAATTACACATAAGCCACTGTCTAATGCAGTTGAGCAAACTAAAACCCAACCAAAACAGCAACCACATGAACCAAGTCAAGGACAACATCAGAAACTATATTTACCACTTGACCAGGATCCCAAATTTGAACCTGATAGTGACCATAATAAAGAGCCAGAGACTTCATTTGAGTCATCAACTATAACTGAAGCTATAGAAGACAAAACTATAACACCTTCATTTGAATCCAATAGGGTTCTTGTTCCATATGTTCTTCCCACTTCTTCTTCAAAATCATCAAACTTCATTGAAGACTTTCTACTCCCAGATTTTGAGTTGTCTCATAATTACAATGAAAATAATAATATTAATAGCAATGTCAACAACAATAGGAGCATGGCATTGTGGGATGATGACTTTATTAATGGTTGGGATTTCTTGGTAAATGATGATAGTGGTGACCCAAGAATAATCATGGATTCAAAATCATGGAACTATGGCTTGTTTTGA 858 0.3741 MGRQPCCDKVGLKRGPWSAEEDKKLINFILCNGQFCWRTVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEDEEKMVIDLHAQLGNRWSKIASNLPGRTDNEIKNHWNTHIKKKLKKIGIDPITHKPLSNAVEQTKTQPKQQPHEPSQGQHQKLYLPLDQDPKFEPDSDHNKEPETSFESSTITEAIEDKTITPSFESNRVLVPYVLPTSSSKSSNFIEDFLLPDFELSHNYNENNNINSNVNNNRSMALWDDDFINGWDFLVNDDSGDPRIIMDSKSWNYGLF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1197 285 SMART sant 66 114 IPR001005 -
Lal5g1197 285 SMART sant 13 63 IPR001005 -
Lal5g1197 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal5g1197 285 MobiDBLite consensus disorder prediction 159 177 - -
Lal5g1197 285 CDD SANT 16 61 IPR001005 -
Lal5g1197 285 MobiDBLite consensus disorder prediction 132 185 - -
Lal5g1197 285 Gene3D - 71 154 - -
Lal5g1197 285 Gene3D - 11 67 - -
Lal5g1197 285 CDD SANT 71 111 IPR001005 -
Lal5g1197 285 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal5g1197 285 PANTHER MYB TRANSCRIPTION FACTOR 1 199 - -
Lal5g1197 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal5g1197 285 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 199 - -
Lal5g1197 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal5g1197 285 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lal5g1197 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal5g1197 285 MobiDBLite consensus disorder prediction 132 150 - -
Lal5g1197 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1197 Lal-Chr5 14745647 14748617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1197 1 285 MYB Transcription Factor Family AT1G66230 52.560 2.72e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal5g1197 Myb_DNA-binding 7.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1197 K09422 - gmx:100794413 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0525 3 3841594 3843790 Lal5g1197 5 14745647 14748617 LSH
Lal6g0304 6 1949834 1952098 Lal5g1197 5 14745647 14748617 PCT