Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1196 ATGATTGCCACTCTGCAATTCTGTTCTGTTTGCTTTGCCCAGTCTATTCGTGGAACCAGGCCTTTTCCATGGCAGCGCACTGATTTGTTTGAAGATAGCCTAAGAGCTGTAGGGATACCTGGAATTGAAGTAGGCACCAAGTTATATGTTTCCAACTTGGATAATGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGATTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGGCGTCCAAGTGGCTCGGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCCCTTAAAAGATATAATAATGTACTTTTGGATGGTAAACCCATGAAGATTGAGATTGTTGGTGCCGATGCAGAGTTACCTATAACTGCTCGTGTGAATGTCACCGGGGTAACCGGGAGGAGGAAAAGGACAGTTGTAATGATGCCTAGAGGTGGTCAAGCTGTAGGTCCTGCTGCTGTGCCAAATCGTGGTGCTGGTTGGGGACGTCGTGGTGGCCCCAAGATTGGCAGTGGTGGCCCCAGGAATTGGAGTGGAAGTGGTCGTGGCAGGGGTGGAGGCCGTGGACGTGGCAGGGCTGGTGGTCGAGGTCGTGCGAAAAAAGATGCAGGTGAGAAGTCCGCCGAGCAACTTGACAAGGAACTGGAAACATATCATGCCGAGGCCATGAACATCTCATGA 702 0.4872 MIATLQFCSVCFAQSIRGTRPFPWQRTDLFEDSLRAVGIPGIEVGTKLYVSNLDNGVTNEDIRELFSELGDLKRYAVHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGADAELPITARVNVTGVTGRRKRTVVMMPRGGQAVGPAAVPNRGAGWGRRGGPKIGSGGPRNWSGSGRGRGGGRGRGRAGGRGRAKKDAGEKSAEQLDKELETYHAEAMNIS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1196 233 MobiDBLite consensus disorder prediction 203 218 - -
Lal5g1196 233 SUPERFAMILY RNA-binding domain, RBD 45 202 IPR035979 GO:0003676
Lal5g1196 233 SMART rrm1_1 47 119 IPR000504 GO:0003723
Lal5g1196 233 CDD RRM_THOC4 46 120 - -
Lal5g1196 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 123 IPR000504 GO:0003723
Lal5g1196 233 PANTHER THO COMPLEX SUBUNIT 4C 13 232 - -
Lal5g1196 233 SMART FoP_duplication_2 162 233 IPR025715 -
Lal5g1196 233 Pfam C-terminal duplication domain of Friend of PRMT1 168 227 IPR025715 -
Lal5g1196 233 Coils Coil 208 228 - -
Lal5g1196 233 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 13 232 - -
Lal5g1196 233 MobiDBLite consensus disorder prediction 153 218 - -
Lal5g1196 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 116 IPR000504 GO:0003723
Lal5g1196 233 Gene3D - 43 122 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1196 Lal-Chr5 14731460 14736978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1196 45 120 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 3.75e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1196 K12881 - gmx:100801491 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1196 5 14731460 14736978 Lal5g1196 5 14731460 14736978 ECH
Lal3g0527 3 3856119 3861344 Lal5g1196 5 14731460 14736978 LSH
Lal5g1196 5 14731460 14736978 Lal18g1312 18 15630174 15635320 LSH