Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1186 ATGGCACTGGCCAAGGACAGAACCCTACACGATTCAAGCATGGGAAGCAAGGTTCAAACTTGTGTTTTCAATGACAATGCTATGGAGATTACCTCTTTCTCACTTCATGGGGTCAATAAGCACAACCACAAGTCTTTGCTTGAAGAGGAAGATGTCTCAAAAAGCACTAATGGGCTCAGCAATGATTCAGCTATAACTCATTCTCCTCCACTATGTGGCAATAATGGCATTGGTTATGTTTATAAAGGTACAAACACAAACTATCAGATTCAAGAAGCTGAATCTGTGATTAATTTCAAAGACAACAATCTCATGCAACCCAGTGAATCTTTGCTTAGCTTTCAGCACAATAGTTACCTCAAAGATAACATTGAGAATGAGTACTACTGTAGTGTTTGGGAGAATAATTTGCATCATAATCAGATTATTAGTCCTAGTAGAAACACTGAAGACTTGCGCCTGGTGCAAGATTTCAATTGCTTTCAAACTGCTAGTGGTTATAGCTCCATAATCAATAGTGCAAAAGAGAAGCAACATGGTGAAAGTTCATTTGGTTGGCTCTATTCTGAACCAACTACCCTTGCTGAGAGTCTCCAAGAGCCAGCATCACAAGAACAAGTCATGAAAAAACGCCCTTCAATGGGAGAGAATATGAAAGGTGCCAAGAAACAATGCACAACTGAGAGTAAAACTCCAAAACCTAAGTCAAGTCCATCCAATGATCCTCAAAGTGTGGCTGCTAAGAATAGAAGAGAGAGGATAAGCGAGAGGATGAAGATCTTACAAGATCTAGTGCCTAATGGCTCCAAGGTTGATTTGGTTACCATGCTGGAAAAAGCAATTAGTTATGTGAAGTTTCTTCAATTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTTCAAGGTGGAAAAGCTCCTGATATTTCTCAAGTAAAAGAAGCCATTGATGCTATTCTTTCATCCCAAAGAGAAGGAAGTTCAACTTCAAAGAATCAAAGTAGATGA 1011 0.3947 MALAKDRTLHDSSMGSKVQTCVFNDNAMEITSFSLHGVNKHNHKSLLEEEDVSKSTNGLSNDSAITHSPPLCGNNGIGYVYKGTNTNYQIQEAESVINFKDNNLMQPSESLLSFQHNSYLKDNIENEYYCSVWENNLHHNQIISPSRNTEDLRLVQDFNCFQTASGYSSIINSAKEKQHGESSFGWLYSEPTTLAESLQEPASQEQVMKKRPSMGENMKGAKKQCTTESKTPKPKSSPSNDPQSVAAKNRRERISERMKILQDLVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVKEAIDAILSSQREGSSTSKNQSR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1186 336 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 324 - -
Lal5g1186 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 297 IPR036638 GO:0046983
Lal5g1186 336 Gene3D - 241 299 IPR036638 GO:0046983
Lal5g1186 336 MobiDBLite consensus disorder prediction 220 245 - -
Lal5g1186 336 CDD bHLH_AtIND_like 239 301 - -
Lal5g1186 336 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 324 - -
Lal5g1186 336 MobiDBLite consensus disorder prediction 195 251 - -
Lal5g1186 336 Pfam Helix-loop-helix DNA-binding domain 248 288 IPR011598 GO:0046983
Lal5g1186 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 287 IPR011598 GO:0046983
Lal5g1186 336 SMART finulus 244 293 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1186 Lal-Chr5 14624767 14626680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1186 75 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.522 1.93e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal5g1186 HLH 4.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1186 - - lang:109345122 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0535 3 3918015 3919684 Lal5g1186 5 14624767 14626680 LSH