Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1185 ATGGAGACTCCTCATTCTCCTTCTCAAAGGGACCCCACTTTCGAACCCGATGAGCCCAGGACGCCGATTGCGGTGCGCCGTGCGTTGCACTTTCTACACTCTGATGAGCCACAGGTGAGGGTCCACGCTGCCCGTGATATCCGGCGCCTTACGAAGACGTCTAGCCGGTGCCGCCGACAGCTCGCGGAAGCTGTTGGTCCACTCGTGTCTATGCTCCGATTCGACTCGCCCGAGTCACATCAACCCGCTCTCCTCGCTTTGCTTAATCTCGCCGTTAAAGATGAAAAGAATAAAATAAACATTGTAGAAGCAGGTGCATTAGAACCAATAATTAAATTCCTCAAATCAGAAGATCTAAATCTTCAGGAGTCTGCAACTGCAGCTTTGCTCACACTATCTGCTTCTTCAACAAACAAACCAATTATAAGTGCTTGTGGTGCCATTCCTCTTCTTGTGGAAATTCTTAAACAAGGAAGTTCACAAGCTAAAGTTGATGCAGTAATGGCTCTCTCTAATTTATCAACATACCCTGATAACTTCAGCATCATACTTGGAACAAATCCAACCACTTTTATAGTTAATATCCTTAAAGCCTGCAAAAAGTCCTCAAAAACAGCTGAGAAATGTTGTGTTTTGATTGAATCCTTGGTGGAATATGATGAAGGAAGAACTGCATTAACTTCTGAAGAAGGTGGGGTTCTAGCAGTTGTTGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAAGGAACATGCTGTTGGAACACTATTGACAATGTGCAACAGTGACAGATGTAAATACAGGGAACCAATTCTTAGGGAAGGTGTTATTCCAGGGCTTCTTGAGCTTACTGTTCAAGGAACACCAAAGTCTCAAACAAAAGCAAGAACCCTTTTGCAGTTACTGAGAGAATCTCCATATCCAAGATCTGAAGTTCAACCTGACACACTTGAGAATATTGTATGCAACATCATATCACAGATTGATGGGGATGATCAATCTAGCAAAGCAAAGAAAATGTTGGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTTTGAGACATTTGCAGCAAAGGGCTCTTGTATGCACCCCTACTGATCTGCCCATAGCTGGCTGTGCTTCTGAAGTTCAGTCGAAATGA 1140 0.4404 METPHSPSQRDPTFEPDEPRTPIAVRRALHFLHSDEPQVRVHAARDIRRLTKTSSRCRRQLAEAVGPLVSMLRFDSPESHQPALLALLNLAVKDEKNKINIVEAGALEPIIKFLKSEDLNLQESATAALLTLSASSTNKPIISACGAIPLLVEILKQGSSQAKVDAVMALSNLSTYPDNFSIILGTNPTTFIVNILKACKKSSKTAEKCCVLIESLVEYDEGRTALTSEEGGVLAVVEVLESGTLQSKEHAVGTLLTMCNSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEVQPDTLENIVCNIISQIDGDDQSSKAKKMLAEMVQVSMEQSLRHLQQRALVCTPTDLPIAGCASEVQSK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1185 379 Gene3D - 14 363 IPR011989 -
Lal5g1185 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 105 147 IPR000225 GO:0005515
Lal5g1185 379 MobiDBLite consensus disorder prediction 1 20 - -
Lal5g1185 379 Pfam Armadillo/beta-catenin-like repeat 95 133 IPR000225 GO:0005515
Lal5g1185 379 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 362 - -
Lal5g1185 379 PANTHER U BOX DOMAIN-CONTAINING 8 362 - -
Lal5g1185 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 179 IPR000225 GO:0005515
Lal5g1185 379 SUPERFAMILY ARM repeat 28 343 IPR016024 -
Lal5g1185 379 SMART arm_5 54 92 IPR000225 GO:0005515
Lal5g1185 379 SMART arm_5 94 134 IPR000225 GO:0005515
Lal5g1185 379 SMART arm_5 135 175 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1185 Lal-Chr5 14609469 14614510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1185 25 302 U-box Gene Family AT5G67340 34.164 3.20e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1185 - - gmx:100780954 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0536 3 3935814 3939215 Lal5g1185 5 14609469 14614510 LSH