Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1180 ATGGGTTGTTGTTTTAGTGCAATAAAGATCAAAGCTGAAAGCCCTCCACGCAATGGTTTGAATTCAAAGGATGTTAGTAGAGAAGCTGATGGTTTAAGCAGCAAGGTGTCCAGTAGTTCTATGCTTCTACCTCCACGGACCGAGGGTGACATCTTGCAGTCCAGCAATTTGAAGAATTTTACATTCAATGAGCTAAGAACTGCTACAAGGAACTTTCGTCCCGATAGTTTGGTTGGTGAAGGTGGTTTTGGTTCTGTATTTAAGGGCTGGATTGATGAGCAAACACTTTCCCCGACAAAACCGGGGACTGGATTTGTCATTGCAGTGAAGAGGCTTAACCAAGAAAGCTCTCAAGGACACAGTGAATGGTTGACAGAAATCAACTACCTGGGGCAACTGCATCATCCTAATCTTGTGAAACTTATTGGTTACTCCTTAGAAGATGAGCACCGGGTTTTGGTATATGAATTTTTGGCCAAAGGAAGTTTGGATAATCATTTGTTTAGGAGGGCTTCTTACTTTCAACCACTTTCGTGGAACATACGAATGAAGATCATTCTTGACGCTGCGAAGGGTCTTGCATTTCTTCATAGTGATGAAGTTGATGTTATATATCGAGACTTCAAAACTTCTAATGTCTTGCTTGATTCAAATTACAATGCAAAACTCTCTGATTTTGGATTGGCAAAGGATGGACCAGAAGGTGATAAGAGTCATGTCTCTACAAGGATAATAGGCACCTACGGCTACGCCGCTCCCGAGTATGTAGCCACAGGTCACTTAACGAAAAAGAGTGATGTATACAGTTTTGGAGTCGTTATCCTAGAAATTATGTCAGGCAAACGCGCAGTGGATGATAACAGGCCATCTGCGGAGCGTAACTTAGTTGAATGGGCCAAGCCATACCTCACTAGCAAACGCAAAATCTTCCAAGTCATGGATGCTCGAATCGAAGGCCAATACTCGTTGCGCGAAGCAATGATATTAGCTCACCTTGCAATTCAATGTTTATCTTCAGAATTCAAATTCAGACCAAAAATGGACGCGGTGGTGAGATTGTTGGAGCATCTTCAGAATTCCAGAGACAAAGGTGAAGTGGAAGGAAGCTCAAGCAGCAGTGGAACAAAACAACATATAACAAGATTCAATGGAGAAGGTACTTCTACTCCAACACCATCTGCTTCTCCTCTTCATTCTTAG 1200 0.4242 MGCCFSAIKIKAESPPRNGLNSKDVSREADGLSSKVSSSSMLLPPRTEGDILQSSNLKNFTFNELRTATRNFRPDSLVGEGGFGSVFKGWIDEQTLSPTKPGTGFVIAVKRLNQESSQGHSEWLTEINYLGQLHHPNLVKLIGYSLEDEHRVLVYEFLAKGSLDNHLFRRASYFQPLSWNIRMKIILDAAKGLAFLHSDEVDVIYRDFKTSNVLLDSNYNAKLSDFGLAKDGPEGDKSHVSTRIIGTYGYAAPEYVATGHLTKKSDVYSFGVVILEIMSGKRAVDDNRPSAERNLVEWAKPYLTSKRKIFQVMDARIEGQYSLREAMILAHLAIQCLSSEFKFRPKMDAVVRLLEHLQNSRDKGEVEGSSSSSGTKQHITRFNGEGTSTPTPSASPLHS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1180 399 MobiDBLite consensus disorder prediction 16 50 - -
Lal5g1180 399 MobiDBLite consensus disorder prediction 364 399 - -
Lal5g1180 399 Pfam Protein tyrosine and serine/threonine kinase 77 353 IPR001245 GO:0004672|GO:0006468
Lal5g1180 399 MobiDBLite consensus disorder prediction 361 399 - -
Lal5g1180 399 SUPERFAMILY Protein kinase-like (PK-like) 51 356 IPR011009 -
Lal5g1180 399 Gene3D Phosphorylase Kinase; domain 1 48 157 - -
Lal5g1180 399 MobiDBLite consensus disorder prediction 31 50 - -
Lal5g1180 399 CDD STKc_IRAK 78 357 - -
Lal5g1180 399 Gene3D Transferase(Phosphotransferase) domain 1 158 378 - -
Lal5g1180 399 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1180 399 PANTHER OS01G0588500 PROTEIN-RELATED 22 370 - -
Lal5g1180 399 PANTHER KINASE 1B 22 370 - -
Lal5g1180 399 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Lal5g1180 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1180 Lal-Chr5 14573322 14576986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1180 58 362 Glycoside Hydrolase AT3G07070 47.231 2.91e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal5g1180 PK_Tyr_Ser-Thr 9.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1180 - - gmx:106795104 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1180 5 14573322 14576986 Lal5g1180 5 14573322 14576986 ECH
Lal5g1180 5 14573322 14576986 Lal18g1320 18 15680741 15687461 LSH
Lal5g1180 5 14573322 14576986 Lal18g1320 18 15680741 15687461 PCT
Lal5g1180 5 14573322 14576986 Lal22g0275 22 1752129 1755506 PCT
Lal18g1320 18 15680741 15687461 Lal5g1180 5 14573322 14576986 PCT
Lal22g0275 22 1752129 1755506 Lal5g1180 5 14573322 14576986 PCT