Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1173 ATGTCTTCAGTGACATCATCGCATTGGTGTTATAGGTGCAGTCGTTTCGTTAGGTTAGCGAGGCAGGACACGGTGGTTTGTCCCGATTGTGACAGCGGTTTCATCGAGGGAATCGAGCAACCGGCGCGTGCTATTCACGTCGACGGACGCCGGCGGCGGTTTCCTGAAGCAACGATGTATATGATTGACCAGCGCCCAAGTTCTGATCAGAATTCTCGCCCCTTTATTCGTGGAACCCGCCGCAACGGTAGTGGCCGGTCACCGTTCAATCCGGTCATTGTCCTGCTCGGAAGTGGTGGTTCGACGGAGGGGGCAGCTGAGCATGATGGCGCGGAGGGTCGTGGGTTCGAGCTTTTCTATGATGATGGTGCAGGTTCTGGTCTTAGACCTTTGCCTCCTAGTATGTCTGAGTTTCTTCTTGGATCTGGAATTGATAGGCTATTAGAACAGGTTTCTCAAATTGAAATCAATGGTATTGGAAGGTATGAACACCCTCCAGCATCAAAATCTGCAATTGATTCATTACCAACAATTGAGATTAGTAATGGTCATTTAGAATTGGATACGAATTGTGCTGTTTGTATGGAGTCTTTTGAATTGGGCACTTCAGTTAGGGAAATGCCTTGTAAGCACATATACCATGAAGAATGCATTGTTCCATGGCTTGCACTTCATAATTCGTGCCCCGTTTGTCGCCATGAATTGCCTGCTGATACAATGCCGAATCAGAATACACCTTTAACGAGGAATTCACCGAATTCTCTTGCTTCGAATGAAAATGAGAATGATGGGTTGACTATTTGGAGGTTGCCAGGGGGAGGGTTTGCTGTAGGGAGGTTTTCTGGTGGGAGAGGAGGTGCTGAGAGAGAGCTTCCAGTTGTTTATACCGAAATGGACGGCGGTTTTAACAATGGCGGTGAACCTCGGAGGATTTCGTGGTCATCTAGAGGGAGTAGAGGAGGGAGAGAGAGTAGTGGTTTCCAGAGGTTTTTCCAGAATTTGTTTGGTTGCTTTAGAGGTGGTGAAGTTGGAGCTCAGCAACTTACTTCAAGTACAGCATCTCCGTCCATCGGAAGGGGAAGTTCGCCACGTTCCAATATGGATCCCTCTCCACGTTCGCGCAGAACTTGGTCTATGGATGGGAACAGTGGAATGAGGTTATGGTAA 1167 0.4816 MSSVTSSHWCYRCSRFVRLARQDTVVCPDCDSGFIEGIEQPARAIHVDGRRRRFPEATMYMIDQRPSSDQNSRPFIRGTRRNGSGRSPFNPVIVLLGSGGSTEGAAEHDGAEGRGFELFYDDGAGSGLRPLPPSMSEFLLGSGIDRLLEQVSQIEINGIGRYEHPPASKSAIDSLPTIEISNGHLELDTNCAVCMESFELGTSVREMPCKHIYHEECIVPWLALHNSCPVCRHELPADTMPNQNTPLTRNSPNSLASNENENDGLTIWRLPGGGFAVGRFSGGRGGAERELPVVYTEMDGGFNNGGEPRRISWSSRGSRGGRESSGFQRFFQNLFGCFRGGEVGAQQLTSSTASPSIGRGSSPRSNMDPSPRSRRTWSMDGNSGMRLW 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1173 388 MobiDBLite consensus disorder prediction 304 324 - -
Lal5g1173 388 CDD RING-H2_RNF126_like 191 232 - -
Lal5g1173 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 335 - -
Lal5g1173 388 MobiDBLite consensus disorder prediction 65 84 - -
Lal5g1173 388 MobiDBLite consensus disorder prediction 349 380 - -
Lal5g1173 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 238 IPR013083 -
Lal5g1173 388 Pfam Ring finger domain 190 232 IPR001841 -
Lal5g1173 388 Pfam zinc-ribbon 7 37 IPR039525 GO:0061630
Lal5g1173 388 SUPERFAMILY RING/U-box 171 239 - -
Lal5g1173 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 335 - -
Lal5g1173 388 SMART ring_2 191 231 IPR001841 -
Lal5g1173 388 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Lal5g1173 388 Pfam Protein of unknown function (DUF1117) 264 354 IPR010543 -
Lal5g1173 388 MobiDBLite consensus disorder prediction 349 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1173 Lal-Chr5 14446319 14447485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1173 130 238 C3H Transcription Factor Family AT5G01980 41.284 7.51e-23 98.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0267 22 1686911 1688029 Lal5g1173 5 14446319 14447485 ECH
Lal9g1598 9 18344011 18346264 Lal5g1173 5 14446319 14447485 ECH
Lal5g1173 5 14446319 14447485 Lal5g1173 5 14446319 14447485 ECH
Lal3g0543 3 4044815 4045978 Lal5g1173 5 14446319 14447485 LSH