Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1162 ATGAAATCCACCGAATTGGAAGAAAGAATGTGCGATTTCAAACCCTTTTCCGAATCAACGCAACCCGGATCCTCCTCATCTCGCTCCATCAGCGAAACCATCAATGGGTCTCACGAATTCACTATAAAGGGTTACTCTTTGGCCAAAGGAATGGGTTATGGGAAGTACATAATGAGCGATACTTTCGGCGTTGGTGGTTACGATTGGGCAATTTACTTTTACCCTGATGGGAAGAATCCAGAGGATAATTCAATGTATGTGTCTGTGTTCATTGCACTGGCGAGTGAAGGAACTGATGTTAGGGCACTTTTTAAGTTGACCCTTGTTGATCAGAGTCATAAGGGGAATGATAAAGTGCATAGCCACTTCGATCGGCCACTTGAGAGTGGACCTTATACTTTGAAGTATAGGGGCAGCATGTGGGGTTACAAGCGTTTTTTCAGAAGGTCACTTTTGGAGACTTCTGAATATCTGAAGAATGATTGCCTTCTCATGCATTGCACCGTTGGCGTTGTCAAAACTCGGTTTGAGGGGTCTAAACAGGGTATTGTTGTGCCACAGTCGAACATGGGCCAGGATTTTAAGGACTTGTTAGAATCTGAAGTTGGCTGTGACATAGTTTTCAAGGTCAAGAGCGAAACTTTCAAAGCTCATAAACTGATACTTGCTGCACGATCTCCTGTGTTTAGAGCTCAGTTTTTTGGACTTGTTGGGGATCCTAGCATAGATGAAGTGGTGGTGGAGGATATTGAGCCTTTTATCTTCAAGGCAATGCTTCTCTTCATATACTCAGACAAGCTTCCTGACATTTATGATGTTATGGGCTCAGTACAGATTTGCTCATATACTGTCATGGTGCAACATCTCTTGGCTGCTGCTGATCTCTATAATCTTGATCGGCTAAAAATGTTATGTGAATCAAAATTGTGTGATGAAATCAATGCTGACACTGTGGCCACAACACTTGCACTGGCTGAGCAACACCACTGTCCACAGCTTAAGGCAATCTGCTTAAAATTTATTGCAAATTCAACAAATTTGGGAGTGGTAATGCAGTCTGAAGCTTTTATGCATTTGAAAGAGAGCTGCCCCTCAATGTTGTTGGAATTGCTGGAAACATTCGCATCAGTGGATGACAACCCATGCCAGCCGTTCAGCATGAAGAGAAGTAGCAGTAGCGTATACGGTCAAAATTTAGCAGATGGTGCGGTAGCCGAATCAGTCAATCCGACTGGTAGGCGTGTTAGGAGGCGGACATAA 1260 0.4357 MKSTELEERMCDFKPFSESTQPGSSSSRSISETINGSHEFTIKGYSLAKGMGYGKYIMSDTFGVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASEGTDVRALFKLTLVDQSHKGNDKVHSHFDRPLESGPYTLKYRGSMWGYKRFFRRSLLETSEYLKNDCLLMHCTVGVVKTRFEGSKQGIVVPQSNMGQDFKDLLESEVGCDIVFKVKSETFKAHKLILAARSPVFRAQFFGLVGDPSIDEVVVEDIEPFIFKAMLLFIYSDKLPDIYDVMGSVQICSYTVMVQHLLAAADLYNLDRLKMLCESKLCDEINADTVATTLALAEQHHCPQLKAICLKFIANSTNLGVVMQSEAFMHLKESCPSMLLELLETFASVDDNPCQPFSMKRSSSSVYGQNLADGAVAESVNPTGRRVRRRT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1162 419 Gene3D - 312 393 - -
Lal5g1162 419 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 23 384 - -
Lal5g1162 419 CDD BACK_AtBPM-like 310 373 IPR034090 -
Lal5g1162 419 CDD BTB_POZ_BPM_plant 190 310 - -
Lal5g1162 419 ProSiteProfiles MATH/TRAF domain profile. 35 169 IPR002083 GO:0005515
Lal5g1162 419 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 23 384 IPR045005 GO:0016567
Lal5g1162 419 SMART math_3 40 152 IPR002083 GO:0005515
Lal5g1162 419 SMART BTB_4 204 313 IPR000210 GO:0005515
Lal5g1162 419 MobiDBLite consensus disorder prediction 17 31 - -
Lal5g1162 419 Gene3D Potassium Channel Kv1.1; Chain A 180 308 IPR011333 -
Lal5g1162 419 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 34 174 IPR008974 GO:0005515
Lal5g1162 419 ProSiteProfiles BTB domain profile. 204 267 IPR000210 GO:0005515
Lal5g1162 419 SUPERFAMILY POZ domain 186 311 IPR011333 -
Lal5g1162 419 Pfam BTB/POZ domain 194 311 IPR000210 GO:0005515
Lal5g1162 419 MobiDBLite consensus disorder prediction 1 31 - -
Lal5g1162 419 SUPERFAMILY TRAF domain-like 32 171 - -
Lal5g1162 419 CDD MATH 36 169 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1162 Lal-Chr5 14336290 14342184 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal5g1162 BTB 1.2e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1162 K10523 - gmx:100786636 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1162 5 14336290 14342184 Lal5g1162 5 14336290 14342184 ECH
Lal3g0555 3 4187050 4192699 Lal5g1162 5 14336290 14342184 LSH