Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1158 ATGAGAGAAAGCCATTGTAACACCTCACTACACTACAGAAACCGTTGGGTTGGTTTTGGTTTAGGGAAAAGCAAAGGGTTTATCACAATGAAGGCACTGATTCTGGTCGGAGGGTTTGGAACAAGGTTGCGGCCATTGACACTAAGTGTTCCTAAGCCTCTTGTTGATTTTGCTAACAAACCCATGATTCTGCATCAGATAGAGGCTCTTAAGGCCATTGGAATCAATGAAGTGGTTCTAGCTATCAATTACCAACCAGAGGTGATGTTGAATTTCCTGAAGGAGTTTGAAGCAAAGCTCGGCATCAAAATCACATGTTCTCAAGAAACTGAACCACTCGGGACTGCAGGTCCCTTGGCTTTTGCCAGGGATAAGCTGATAGATGACTCTGGAGAGCCATTTTTTGTTCTCAACAGTGACGTTATTAGCGAGTACCCACTTAAAGAAATGATTGAATTCCACAAGGCCCATGGAGGAGAGGCTTCCATAATGGTGACAAAGGTTGATGAGCCATCAAAATATGGTGTGGTTGTGATGGATGAGACCACCGGGCAGGTTGAGAAATTTGTGGAGAAACCCAAGTTGTTTGTTGGTAACAAAATCAATGCTGGAATCTACCTATTGAACCCCTCAGTTTTGGATCGAATTAAAGTGAGGCCCACTTCTATTGAGAAAGAGGTGTTTCCAAATATCGCAACAGAGAAAAAGCTGTATGCTATGGTGCTGCCAGGATTCTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGCCTGAGACTCTATTTGGACTCGCTGAGGAAAAAGAATTCCTCTAAGTTGTTAAGTGGCCCTCACATTCTGGGGAATGTCATTGTGGATGAGACTGCCAAAATTGGCGAGGGATGTCTCATTGGACCTGATGTTGCAATCGGTCCTGGCTGCATTGTTGAGTCAGGTGTCCGACTCTCACACTGCACTGTAATGCGAGGAGTTCGCATTAAGAAACATGCTTGCATATCCAGCAGTATCATTGGGTGGCATTGCACCATTGGGCAATGGGCTCGTGTGGAGAATATGACTATCCTCGGAGAAGATGTCCATGTATGTGATGAAATTTACAGCAATGGTGGTGTGGTTTTGCCTCACAAGGAGATCAAGTCAAGCATTCTGAATCCAGAGATAGTCATGTGA 1173 0.4459 MRESHCNTSLHYRNRWVGFGLGKSKGFITMKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGINEVVLAINYQPEVMLNFLKEFEAKLGIKITCSQETEPLGTAGPLAFARDKLIDDSGEPFFVLNSDVISEYPLKEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMDETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIKVRPTSIEKEVFPNIATEKKLYAMVLPGFWMDIGQPRDYISGLRLYLDSLRKKNSSKLLSGPHILGNVIVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSHCTVMRGVRIKKHACISSSIIGWHCTIGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILNPEIVM 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1158 390 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 20 390 - -
Lal5g1158 390 CDD M1P_guanylylT_B_like_N 30 263 IPR045233 GO:0004475|GO:0005525|GO:0009298
Lal5g1158 390 Gene3D Hexapeptide repeat proteins 265 386 - -
Lal5g1158 390 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 20 390 - -
Lal5g1158 390 Pfam Nucleotidyl transferase 31 258 IPR005835 GO:0009058|GO:0016779
Lal5g1158 390 SUPERFAMILY Nucleotide-diphospho-sugar transferases 30 342 IPR029044 -
Lal5g1158 390 Pfam Bacterial transferase hexapeptide (six repeats) 290 324 IPR001451 -
Lal5g1158 390 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 29 262 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1158 Lal-Chr5 14309917 14316096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1158 30 214 Eukaryotic Initiation Factors Gene Family AT4G18300 24.121 4.40e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1158 K00966 - csin:114292478 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1158 5 14309917 14316096 Lal5g1158 5 14309917 14316096 ECH
Lal3g0557 3 4207679 4210425 Lal5g1158 5 14309917 14316096 LSH
Lal5g1158 5 14309917 14316096 Lal18g1343 18 15867091 15869659 LSH
Lal5g1158 5 14309917 14316096 Lal18g1343 18 15867091 15869659 PCT
Lal5g1158 5 14309917 14316096 Lal22g0257 22 1633173 1636516 PCT
Lal5g1158 5 14309917 14316096 Lal6g0268 6 1741787 1745133 PCT
Lal18g1343 18 15867091 15869659 Lal5g1158 5 14309917 14316096 PCT
Lal22g0257 22 1633173 1636516 Lal5g1158 5 14309917 14316096 PCT
Lal6g0268 6 1741787 1745133 Lal5g1158 5 14309917 14316096 PCT