Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1136 ATGAGTTCTTCTTTTTCTACTGCGGTCACTACCCTCTCAAAACGCACCGTTTTCCCTAACCAAAAATCCACACTCTCAGATTTAAAGCTTTCAATCTCAGACCTCAACATGATTTGCTGCCACTACATCCAAAAGGGTTGTCTCTTCAAAACTCCTTCATTTCCCTCAAACGTTCTCATTCCTCTCCTCACTAACTCACTCTCACGCGCCCTTTCCATCTTTCCCCCACTCGCTGGCCGATTTATAACTGATTCCGACGGTTACATTTTCATTACTTCGAACGATGCCGGTGTTGATTTCATTCACGCCACCGCCATTGAACTTAGCGTCACTGATCTCTTGTCTCCGATTGATGTGCATCATTACTTCAAGGAACTTTTTCCTTATCATTGGAAAATTAACTACGACGCTCATTTCTCTCCGATCATGGCTGTTCAGGTTACTGAACTCGCCGACGGTGTATTCATTGGTTGTTCCGTCAGCCATGCCGCCGTTGATGGAACTTCGTTGTGGAATTTCTTTAACACCTTTGCTGAAGTTACTAGAGGAGTTGGAAATGATTCGAGAGTACCGGATTTTCGCCGGGAAAATATTCTAGTCTCGAACGCTGTTCTTCAGTTGCCGGAGGATGATATTAAGGTGACGTTTAACTACGAAGAACCGTTACGTGAGAGAATTTTCAACTTCAGCTACGATACTCTTCAAAAACTGAAATCCAGAGTGAACGAACGGTCACTGATGGAGAACGATAACGGTTACTGCGTCGTTGAGATTTCGTCGTTTCAGTCTCTCTGTGCGTTGGTGTGGCGTGCAGTTACACGTGCGAGGAAGCTTCTAGAAACAAAAACGACAACGTTTCGAATGGCAGTGAACATTCGCCATAGAATAGAGCCAAAGTTAACCGACTCATATTTCGGCAACGCAATTCAAGGCATAGCAACACGCGCTGTAGCTGGTGACGTGTTATCGAAAGATCTGCGTTGGTGTGCGGAGCAGCTGAACAAGAACGTGAAGGCGCACGATAGCGCTACGGTACGGCGAGAACTAGAGGATTGGGAGCGTGATCCAAAGTGCTTTGCGCTTGGGAACAGAGATGGTGCAACGATTCAAATGGGAAGTTCGCCGAGATTTCCGATGTATGAAAATGATTTCGGGTGGGGAAAGCCAGTTGCGGTGAGGAGCGGCGGAGGAAATAAGTTTGACGGGAAGATGTCTGCGTTTCCCGGTAGCCAAGGCGGTGGTGCAGTTGATTTGGAGGTGGTGTTGACACCAGAAACGATGGCGGGGATTGAGAATGATCCGGAGTTCATGTTTTACGTATCTGGTTGA 1329 0.468 MSSSFSTAVTTLSKRTVFPNQKSTLSDLKLSISDLNMICCHYIQKGCLFKTPSFPSNVLIPLLTNSLSRALSIFPPLAGRFITDSDGYIFITSNDAGVDFIHATAIELSVTDLLSPIDVHHYFKELFPYHWKINYDAHFSPIMAVQVTELADGVFIGCSVSHAAVDGTSLWNFFNTFAEVTRGVGNDSRVPDFRRENILVSNAVLQLPEDDIKVTFNYEEPLRERIFNFSYDTLQKLKSRVNERSLMENDNGYCVVEISSFQSLCALVWRAVTRARKLLETKTTTFRMAVNIRHRIEPKLTDSYFGNAIQGIATRAVAGDVLSKDLRWCAEQLNKNVKAHDSATVRRELEDWERDPKCFALGNRDGATIQMGSSPRFPMYENDFGWGKPVAVRSGGGNKFDGKMSAFPGSQGGGAVDLEVVLTPETMAGIENDPEFMFYVSG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1136 442 Gene3D - 220 433 IPR023213 -
Lal5g1136 442 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 8 441 - -
Lal5g1136 442 Pfam Transferase family 8 437 - -
Lal5g1136 442 SUPERFAMILY CoA-dependent acyltransferases 53 187 - -
Lal5g1136 442 Gene3D - 10 210 IPR023213 -
Lal5g1136 442 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1136 Lal-Chr5 14090211 14091539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1136 33 440 Monolignol Biosynthesis Gene Families AT5G48930 29.439 7.57e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1136 - - cam:101506439 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0239 22 1479815 1481257 Lal5g1136 5 14090211 14091539 ECH
Lal5g1136 5 14090211 14091539 Lal5g1136 5 14090211 14091539 ECH
Lal5g1136 5 14090211 14091539 Lal18g1360 18 15974585 15976030 PCT
Lal5g1136 5 14090211 14091539 Lal22g0239 22 1479815 1481257 PCT