Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1133 ATGGAACAAAACATGTCAGGCTTTTGTATTAGAGGTGGAAGTGTTAGTGCTAATAGTGGAAGTACTGGCACTAAGTGTGGGCGTTGGAATCCCACTACTGAACAGGTTAATCTTTTGACTGAATTGTTCAGTTCTGGACTACGCACTCCAACCACTTCTCAGATTCAAAAGATCTCTACTCAGCTAAGTTTTTATGGCAAGATTGAGAACAAGAACGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGAAAGACAGAAACGTCGCAAGGTTTCTTTTGATGATGATGATAAGGATGTCAATATTCGTCCAGAAAACGCCATGAATTTTTCTACACAAAATTTTGCTTATCATGTTTCAGAACCCGAAAGGTTGACTCAAACTCTTCAACTCTTCCCCTTGAACTCCTTTCATGGTGAATCAGAAACACTGAAGTTGGGAGTGCATGGAAATGAATGCAGGGATACTACAATGTTTTCATACAAAATGGGGGAACAAATGGATCACCCACCACTAAATCTTCGCTTGAGTTTTATGTAA 540 0.3963 MEQNMSGFCIRGGSVSANSGSTGTKCGRWNPTTEQVNLLTELFSSGLRTPTTSQIQKISTQLSFYGKIENKNVFYWFQNHKARERQKRRKVSFDDDDKDVNIRPENAMNFSTQNFAYHVSEPERLTQTLQLFPLNSFHGESETLKLGVHGNECRDTTMFSYKMGEQMDHPPLNLRLSFM 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1133 179 CDD homeodomain 28 88 IPR001356 GO:0003677
Lal5g1133 179 Gene3D - 25 93 - -
Lal5g1133 179 SMART HOX_1 24 91 IPR001356 GO:0003677
Lal5g1133 179 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 168 IPR044555 GO:0003700|GO:0099402
Lal5g1133 179 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Lal5g1133 179 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 168 - -
Lal5g1133 179 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Lal5g1133 179 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1133 Lal-Chr5 14073517 14074917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1133 8 179 Wox Gene Family AT3G11260 53.261 1.65e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lal5g1133 Homeodomain 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1133 - - pvu:PHAVU_008G226100g 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1133 5 14073517 14074917 Lal5g1133 5 14073517 14074917 ECH
Lal3g0582 3 4398384 4399698 Lal5g1133 5 14073517 14074917 LSH
Lal5g1133 5 14073517 14074917 Lal18g1361 18 15985673 15986688 LSH
Lal5g1133 5 14073517 14074917 Lal18g1361 18 15985673 15986688 PCT
Lal18g1361 18 15985673 15986688 Lal5g1133 5 14073517 14074917 PCT