Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1101 ATGTCAAGTGTAGAAAGCACAGGAAGTTCAGGAAGTGCAGGAGCAATTTTCTTTTTGGTCAGCATGGTAGTGATTGTTGCGAAGATTGGTATCTTTTATTGTGTATGCCGGAAAAGAATTTGTCAATCAGTTAGTCCAGAACCACAGTTTATGACACTCACTATGGACAAATTTCTTACTGATATGGAAAGGGAGAAACCAATCAGGTTTAGTGATCAGCAACTAAGGATTGCAACTGGTAACTACTCTAACTTGTTGGGATCAGGAGGTTTCGGTGCAGTCTATAAAGGTATTTTCAGTAACGGGACTATTGTAGCTGTGAAGGTTCTATATGGGAGTTCTGACAAGAGAATTGAGGATCAGTTTAAGGCAGAAGTGAGTACAATTGGTAGGACTCGTCATTTCAATCTTGTTCGGCTATATGGATTTTGCTTTGAAAGAAACATGAGAGCGCTTGTTTACGAGTACATGGTGAATGGCTCGCTCGATAGGTATCTGTTTCATCAAAACAATACCTTAGGATTTGAAAAACTTCATGAGATCGCAGTCGGCACAGCCAGAGGCATTTCTTACCTGCATGAAGAGTGCCAACAAAGAATAATCCACTACGACATAAAACCAGGAAATATTCTCTTGGACAAGAATTTCAATCCTAAAGTTGCGGATTTTGGGTTGGCCAAGCTTTGTAACAGAGAAAATACTCATATAACCATGACTGGAGGCAGAGGGACTCCCGGTTATGCTGCGCCCGAGCTTTGGATGCCCTTTCCTATAACTCATAAGTGTGATGTTTACAGCTTTGGCATCCTGTTATTTGAAATCATAGGTAGAAGAAAAAACGTCGATGTTAGCCTTCCCGAAAGCCAAGAATGGTTTCCAATTTTGGTTTGGAAAAGATTTGATACTGGACAATTGGAGGAGCTAACAATAGCCTGTGGGATAGAAGAGAAAGATAAGGAGATAGCAGAAAGAATGGTTAAGGTAGCTCTTACTTGTGTTCAGTATAGGCCAGAATCAAGGCCTATGATGAGTGTTGTGGTGAAAATGTTAGAAGGTTCATTAGAAATTCCAGATCCTTTGAATCCATTTCAGCACTTGATGGATGGGATTTTCGCAGCGCACCCAGTCCCAACGTCGCAGAGCTATACTAATACGAGTATTTCTTCGGGCTCTTGCGTTATGGCAACCGACTCCAGCGCTGTATGTACTACTCCTATTACGAGGAGGTATGAGATTGAATTAGACTCTAGCAATGGATGA 1260 0.4135 MSSVESTGSSGSAGAIFFLVSMVVIVAKIGIFYCVCRKRICQSVSPEPQFMTLTMDKFLTDMEREKPIRFSDQQLRIATGNYSNLLGSGGFGAVYKGIFSNGTIVAVKVLYGSSDKRIEDQFKAEVSTIGRTRHFNLVRLYGFCFERNMRALVYEYMVNGSLDRYLFHQNNTLGFEKLHEIAVGTARGISYLHEECQQRIIHYDIKPGNILLDKNFNPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGILLFEIIGRRKNVDVSLPESQEWFPILVWKRFDTGQLEELTIACGIEEKDKEIAERMVKVALTCVQYRPESRPMMSVVVKMLEGSLEIPDPLNPFQHLMDGIFAAHPVPTSQSYTNTSISSGSCVMATDSSAVCTTPITRRYEIELDSSNG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1101 419 CDD STKc_IRAK 86 352 - -
Lal5g1101 419 PANTHER RUST RESISTANCE KINASE LR10-RELATED 14 415 IPR045874 GO:0004672
Lal5g1101 419 PANTHER PUTATIVE-RELATED 14 415 - -
Lal5g1101 419 ProSiteProfiles Protein kinase domain profile. 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1101 419 Gene3D Transferase(Phosphotransferase) domain 1 157 357 - -
Lal5g1101 419 Gene3D Phosphorylase Kinase; domain 1 55 156 - -
Lal5g1101 419 SMART serkin_6 80 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1101 419 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524
Lal5g1101 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Lal5g1101 419 Pfam Protein tyrosine and serine/threonine kinase 84 350 IPR001245 GO:0004672|GO:0006468
Lal5g1101 419 SUPERFAMILY Protein kinase-like (PK-like) 70 378 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1101 Lal-Chr5 13555097 13559680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1101 69 360 Receptor kinase-like Gene Family AT5G38280 42.904 1.39e-76 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Lal5g1101 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1101 - - gmx:100803355 640.958