Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1010 ATGGACTCTTCTTCTTCTAGTACCTTAGACACCTCTACAACCTCTTCTTACACCACCACCAACAACCACCACAACAACCTAACCTTCTCAACACACCCACTCATGACAACCTCATTCTCTGACCTCCTTACTTATCCCACTGATCACAGCAACAACCTCGGATTCTCCGAAAGGCCTATGAGGTTGTCTGGTTCAGTTGGGTCAATTATTGTGCCAAAATTTAAGTCAACCCCACCTCCTTCTCTTCCTCTTTCTCCTTCTTCTTACTTTAATATGCCTCATGGCTTCACCTTTTCTGACCTTCTTGATTCTCCAGTTCTTCTTAACTCTTACAACATTTTGCCATCTCCAACAACTGGAGCATTTGCTGGTCAAGGTTTCAATTGGAAGAGTGATTATGGGGAAAACAAACAGAATAATATTAAAGAAGAAGAAGAAAAAAAAAACTTCTCAAGTTTCTCATTTCCAACACAACAACAGCCTCAAGTTCAATCTTCAAACATTACAAATCAAACTCAACAACATGCATGGACTTTTCATGAAGCAACTAAGCAAGAGAGTATGGTAAAAGCTGAATACTCTTCCATGCAGAGTTTCACCCCGGAGATTTCTAATGTCCAAAGTAACCACAATAGTAATTTTCAACCACAAATCTTAAGTAGAAGATCAAATGATGGGTACAATTGGAGGAAATATGGGCAAAAACAAGTGAAAGGGAGTGAAAGAAGTTATTACAAATGCACATACCCCAATTGCTCAACAAAGAAAAAAGTTGAAAGCACTTTAGATGGCCAAATTACTGAGATAATTTACAAAGGTAATCATAACCATCCTAAGCCTCTAGCTACAAGGAAGAACTCATCTTCTCTTGTTATTGCTCCTTCAAAACATGTTAGAAATGAGATACAAGATCAATCATATGTCACACATGGCAGTGGACAAATTGATTCAGCTGCAACTCCTGAGAACTCATCAGTATCAATGGGAGATAATGATTATGAGCATAGCTCTCAGAGGAGTAAATCAGGAACGAATGAGATCGATGAAGATGAACCTGATGCCAAAAGATGGAGAATAGAAGGAGAAAATGAGGGTATATCAGCATTTGGAAGTAGAACAGTGAGAGAGCCCAGGGTTGTAGTTCAGACAACAAGTGACATTGATATCCTAGATGATGGGTATAGATGGAGGAAATATGGGCAGAAAGTAGTGAAGGGAAATACAAATCCAAGGAGTTACTACAAATGCACATTCCTAGGATGCCCAGTGAGGAAGCATGTAGAAAGGGCCTCACAAGATTTAAGGGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGATGTCCCTGTTGCACGTGGAAATGGCAACCATTCTATCAAAAGATCAATGCCAAATGATACCACAAACAATACCATTACTAGTACAGTTACTGCCATAAGACCCTCTAATATTACTCAGTTTCAAAATTTTAGACCACAAGAAGGGCAATTACACTTCAACCAATGGATGCTGCAGAGTCCGGGAAGTTTCGGTTTCTCTGGGTTTGGGAATCTAATGGAGTCTTATATGGACGACTGA 1581 0.3972 MDSSSSSTLDTSTTSSYTTTNNHHNNLTFSTHPLMTTSFSDLLTYPTDHSNNLGFSERPMRLSGSVGSIIVPKFKSTPPPSLPLSPSSYFNMPHGFTFSDLLDSPVLLNSYNILPSPTTGAFAGQGFNWKSDYGENKQNNIKEEEEKKNFSSFSFPTQQQPQVQSSNITNQTQQHAWTFHEATKQESMVKAEYSSMQSFTPEISNVQSNHNSNFQPQILSRRSNDGYNWRKYGQKQVKGSERSYYKCTYPNCSTKKKVESTLDGQITEIIYKGNHNHPKPLATRKNSSSLVIAPSKHVRNEIQDQSYVTHGSGQIDSAATPENSSVSMGDNDYEHSSQRSKSGTNEIDEDEPDAKRWRIEGENEGISAFGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNTNPRSYYKCTFLGCPVRKHVERASQDLRAVITTYEGKHNHDVPVARGNGNHSIKRSMPNDTTNNTITSTVTAIRPSNITQFQNFRPQEGQLHFNQWMLQSPGSFGFSGFGNLMESYMDD 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1010 526 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 55 524 - -
Lal5g1010 526 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g1010 526 MobiDBLite consensus disorder prediction 334 355 - -
Lal5g1010 526 ProSiteProfiles WRKY domain profile. 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g1010 526 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g1010 526 MobiDBLite consensus disorder prediction 301 355 - -
Lal5g1010 526 Pfam WRKY DNA -binding domain 391 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g1010 526 Pfam WRKY DNA -binding domain 224 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g1010 526 MobiDBLite consensus disorder prediction 447 470 - -
Lal5g1010 526 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 524 IPR044810 GO:0003700
Lal5g1010 526 SUPERFAMILY WRKY DNA-binding domain 222 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g1010 526 MobiDBLite consensus disorder prediction 301 333 - -
Lal5g1010 526 Gene3D WRKY domain 208 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g1010 526 Gene3D WRKY domain 375 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g1010 526 MobiDBLite consensus disorder prediction 1 27 - -
Lal5g1010 526 SMART WRKY_cls 223 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g1010 526 SMART WRKY_cls 390 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1010 Lal-Chr5 12460707 12465562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1010 65 491 WRKY Transcription Factor Family AT2G38470 45.815 1.03e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal5g1010 WRKY 9.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1010 K13424 - gmx:100127385 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1010 5 12460707 12465562 Lal5g1010 5 12460707 12465562 ECH
Lal5g1010 5 12460707 12465562 Lal3g0662 3 5175762 5179822 LSH
Lal5g1010 5 12460707 12465562 Lal18g1264 18 15269399 15272972 PCT
Lal5g1010 5 12460707 12465562 Lal22g0332 22 2113617 2117179 PCT
Lal5g1010 5 12460707 12465562 Lal6g0362 6 2302659 2305975 PCT
Lal18g1264 18 15269399 15272972 Lal5g1010 5 12460707 12465562 PCT
Lal22g0332 22 2113617 2117179 Lal5g1010 5 12460707 12465562 PCT
Lal6g0362 6 2302659 2305975 Lal5g1010 5 12460707 12465562 PCT