Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0968 ATGCTTGCAGCTATCATTTCCTTGCTCCTAGTCATACTCTTTGTGCTTCTCCTCCATCTCTATGCCAAGTGGTTCATATTTCAGCGCCGCCGCCGTCCCAGGATAACCACCGTGACTGTCTCCGATGTCCTAGGCCCTGCAAGGTTCCACCACTTCCACAGCTTCAACATAGAAGACTCACCCCTCTCGAGTTCTAACACTAAAGGCCTCGATTCTTCAATCGTTGCCGTGATTCCAATGTTTATTTATAAAGCTGCTGCAGAAGCAGAAGAACAAGATGATGGTAATGATGGTCATAAGGTTAAACAAGAATTGGAATGTGTCATTTGTCTAAGTACTTTTGAAGATGGTGAAATGGGAAGGTGTTTGCCAAAATGTGGACATGGTTTTCATGTGGAGTGCATTGATATGTGGTTGAGTTTACATTCCAATTGTCCAATTTGTAGAACTCCTATTGTGGGTGGTTCTCAGGTAGATTCAGTTGGTAATGTTGGGGAAGGTGATGATTCTGCATTTGTTGAGATTAGGGTTGATGATTCTATTGTTACTCCAAATTCTGAGAGTGGAAATGATAACGCAGGAGTGAATAGTTCAGTGTCAGAAGCTTCATTTTTGTTGTTTGGGTTCTCTTTAAAGGGAATCCTTAGTAAAGTTTTCTCATCTTCCAATGTAAATGAATTGCATGCTTCAGAGCCATGA 699 0.4177 MLAAIISLLLVILFVLLLHLYAKWFIFQRRRRPRITTVTVSDVLGPARFHHFHSFNIEDSPLSSSNTKGLDSSIVAVIPMFIYKAAAEAEEQDDGNDGHKVKQELECVICLSTFEDGEMGRCLPKCGHGFHVECIDMWLSLHSNCPICRTPIVGGSQVDSVGNVGEGDDSAFVEIRVDDSIVTPNSESGNDNAGVNSSVSEASFLLFGFSLKGILSKVFSSSNVNELHASEP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0968 232 Pfam Ring finger domain 106 149 IPR001841 -
Lal5g0968 232 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 224 IPR044675 -
Lal5g0968 232 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lal5g0968 232 SMART ring_2 107 148 IPR001841 -
Lal5g0968 232 CDD RING-H2_EL5_like 106 149 - -
Lal5g0968 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 155 IPR013083 -
Lal5g0968 232 PANTHER - 1 224 - -
Lal5g0968 232 SUPERFAMILY RING/U-box 101 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0968 Lal-Chr5 11845751 11846449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0968 1 189 Rapid Response to Elicitors AT3G16720 32.292 1.77e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0968 - - lang:109329145 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0968 5 11845751 11846449 Lal5g0968 5 11845751 11846449 ECH
Lal5g0968 5 11845751 11846449 Lal3g0687 3 5490683 5491444 LSH
Lal5g0968 5 11845751 11846449 Lal18g1247 18 15151932 15155090 PCT
Lal5g0968 5 11845751 11846449 Lal22g0105 22 645226 650302 PCT
Lal18g1247 18 15151932 15155090 Lal5g0968 5 11845751 11846449 PCT
Lal22g0105 22 645226 650302 Lal5g0968 5 11845751 11846449 PCT