Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0950 ATGGTGACCGGTGAGGCAGCTATGTGGGCTCTACTTTTTGACTCAAACCATAAAGAGAAGGGACTGAAAAGTCTTCCACTCCCTCCTCGTGTTTTTTCCCTCTCTCTTTCTCTCTCAAAAGCTTTGTCTCAAAGGGAAGATAGAGTCATGTTCACCGCTTCCAATGGTTTGCATTACAGAATTTCTGCTTTGCTTGAGTTCTCAGCAGCAGATGATGTGAAGGGTTTGAAAAATGCAATTGAGGAAGAGGGTCATGGTGTTGATGAAGTAGGATTGTGGTATGGAAGGAGGGTTGGTTCGAAGGACGTTGGTTATGAAGAGAGGACCCCTCTTATGATTGCTGCTATGTTTGGAAGCAAGGGTGTGTTATCTTATATTATTGGAACTGGTGGTGTTGATGTTAACCAGGTTTGTGGGTCTGATGGGGCCACTGCCCTTCATTGTGCTGTTGCTGGTGGTTCTGCCAATTCGCCGGAAATCATTAAGCTTTTGATTGATGCATCGGCTGATGTTAATGCCGTTGATGCCAACGGGAACCGGCCCTCTGACTTGATTGGCTTTGTGTTCAATAGTATATTCAATCCTAGGAGGAGGATACTGGAAGCCATACTAGAAGGTAGAGATGGTGGTGTTGATGAGGCTTGCCTTACATTTGATAAAGCAGATGGCGAAATGTTGAGGCTGCAACAGCATTATATCGATGTGCATCGTGCTCCGAAGGAAGGGACTGAGAAGAAAGTTTATTCTGTTGATGTCTCTCTTCCAGACATAAAGGATGGTTTATATAGTACAGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCATGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGTCCCTTTGTTCATCCAGGTGAAAATGCAAGGCGACGAGATCCTAAGAAATATCATTATAGCTGTGTCCCTTGCCCCGAGTTCAAGAAGGGATTGTGCAGCAAAGGAGATGCTTGTGAGTATGCACATGGTATCTTTGAGTGCTGGCTTCACCCTGCGCAATATCGAACTCGGCTTTGCAAAGATGAGGCTGGATGCACCAGAAGAGTATGCTTCTTTGCTCACAAGCTGGAGGAGCTTCGCCCGTTGTATGCATCTACTGGTTCTGCAATGCCTTCTCCCCGATCATATTCGGCTAATGCTTCTTCATTAGAGATTGGTTCATTAAGCCCTTTCACACCAGGCTCTCCAACTGCTTCAGTACCACCTTTGTCTCCATCTGGAGCAGCTTCTCCTGTGGGCAGAGCAGCCATGTGGCAGACCACTCAGTTTCATGTAGCAGTCCCTACGCTTCAGCTGGCCGGAAGCAGATTGAAAACCGCATCAAATGCCAGAGATGTTGGTTTAGGCATTGAATTGCCCGGACTAGAAAATCGTTGTCTTGTGCAGAAGATGTTATTGTCGGATGAGATGGCTGAGCTTTCTTCCCCTTCCAAATGGAAAAATACCACGCGAAATAGTCCATCTTTTCCTGACTCATTTGATGATGATGCTGGGGAGTTAAATAGGAATCAGCAACTGAGAAGCTATTCTACAAATGTGATTGGATCACCATTGTCTTTGAATTCAAGAAATGTTGCATTTTCAAAGCGGAGTCAGAGCTTCATTGAGCGAAGCGTGGCAAGCCATAATTCTGAGCCTTCCATCTTCTCTGGGTGGGGCTCCCCTGATGGCAAATTAGACTGGGCCATCCGCGGAGAAGAGCTGAATAAACTGCGAAAATCGGCTTCTTTTGGATTTCGAGGGACCAATAGTCCTTTAATAATGGCTGCAACCACTTCGCCAACCAATGTTGATGAACCAGATGTATCTTGGGTTCATTCACTTGTGAAGGATGCTCCACCAATGGAAACTGGCCAGTATAGCATTGAAGACGAGCTACATTCACCGCAACGCTATCTTAACAATGGAACAGATATGGTTCCAGCTTGGCTGGAGCAATTGTACATGGAGCAGGAGCAGATGGTGGCTTGA 1995 0.4571 MVTGEAAMWALLFDSNHKEKGLKSLPLPPRVFSLSLSLSKALSQREDRVMFTASNGLHYRISALLEFSAADDVKGLKNAIEEEGHGVDEVGLWYGRRVGSKDVGYEERTPLMIAAMFGSKGVLSYIIGTGGVDVNQVCGSDGATALHCAVAGGSANSPEIIKLLIDASADVNAVDANGNRPSDLIGFVFNSIFNPRRRILEAILEGRDGGVDEACLTFDKADGEMLRLQQHYIDVHRAPKEGTEKKVYSVDVSLPDIKDGLYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYHYSCVPCPEFKKGLCSKGDACEYAHGIFECWLHPAQYRTRLCKDEAGCTRRVCFFAHKLEELRPLYASTGSAMPSPRSYSANASSLEIGSLSPFTPGSPTASVPPLSPSGAASPVGRAAMWQTTQFHVAVPTLQLAGSRLKTASNARDVGLGIELPGLENRCLVQKMLLSDEMAELSSPSKWKNTTRNSPSFPDSFDDDAGELNRNQQLRSYSTNVIGSPLSLNSRNVAFSKRSQSFIERSVASHNSEPSIFSGWGSPDGKLDWAIRGEELNKLRKSASFGFRGTNSPLIMAATTSPTNVDEPDVSWVHSLVKDAPPMETGQYSIEDELHSPQRYLNNGTDMVPAWLEQLYMEQEQMVA 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0950 664 ProSiteProfiles Ankyrin repeat region circular profile. 141 175 - -
Lal5g0950 664 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 51 512 - -
Lal5g0950 664 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 526 663 - -
Lal5g0950 664 MobiDBLite consensus disorder prediction 482 498 - -
Lal5g0950 664 Pfam Ankyrin repeats (3 copies) 101 175 IPR002110 GO:0005515
Lal5g0950 664 PANTHER UNKEMPT FAMILY MEMBER 51 512 IPR045234 -
Lal5g0950 664 PANTHER UNKEMPT FAMILY MEMBER 526 663 IPR045234 -
Lal5g0950 664 SUPERFAMILY Ankyrin repeat 94 184 IPR036770 -
Lal5g0950 664 ProSiteProfiles Zinc finger C3H1-type profile. 311 333 IPR000571 GO:0046872
Lal5g0950 664 SMART ANK_2a 141 173 IPR002110 GO:0005515
Lal5g0950 664 SMART ANK_2a 106 136 IPR002110 GO:0005515
Lal5g0950 664 MobiDBLite consensus disorder prediction 482 506 - -
Lal5g0950 664 Gene3D - 146 186 IPR036770 -
Lal5g0950 664 Gene3D - 53 145 IPR036770 -
Lal5g0950 664 Gene3D - 306 369 - -
Lal5g0950 664 ProSiteProfiles Ankyrin repeat profile. 141 176 IPR002110 GO:0005515
Lal5g0950 664 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 331 IPR000571 GO:0046872
Lal5g0950 664 SMART c3hfinal6 341 364 IPR000571 GO:0046872
Lal5g0950 664 SMART c3hfinal6 306 332 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0950 Lal-Chr5 11566576 11569449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0950 59 659 C2H2 Transcription Factor Family AT5G12850 38.102 4.05e-139 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal5g0950 Ank_2 1.5e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0950 - - aprc:113846970 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0950 5 11566576 11569449 Lal5g0950 5 11566576 11569449 ECH