Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0934 ATGAAATCCATGGGAGGTAGAATAATAGTAAGTGGTGGACTTGATGCAATTCCCATTCATGGGAGTGGAAATATGAAGGCTACAATCCCTTCTATGTTTCGTTCAGGTCCTCCATTGACAGCCATAGACAGGTTCTTATGGGGTCAACAACAACAACCTCATAATATTGTTGCAAGGAACACTAATGCAAGTGTTTTTGATAATGAGTTCTACAAGGTTGCTTGTTCTGGTGGTGGTTCAAGCTATAGGTTTGTGTGGCCTAATTACACTCAAGAAGGAAGCTTCTATGATGAAATCATTGCAAATGAAGAGGCTTTGAACTGGGAAAACCATTTCAACACAACGTGTCAGAATGAAAATGCCAATGTTTTAAGGAAGAATGTGAAAATGGTGAGGAGAAAGCCTAAGAAAGGGTCATCATCTATGTCTTTGATCAAAGGACAGTGGACTGTTGAAGAAGATAGGAAACTTTTGAAGTTGGTGAAGCAACATGGTGTAACAAAATGGTCTCAAATTGCTGAGAAGTTGGAGGGAAGGGCTGGTAAGCAGTGTCGAGAAAGATGGCATAACCATTTGCGGCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGATCTTAGTAGAAACTCATGCAAAGGTTGGAAATCGTTGGGCAGAGATAGCAAAGACCATTCCTGGAAGAACTGAGAATGCCATAAAGAACCATTGGAATGCCACTAAAAGGAGACAGAACTCAAGGAGAAAGAACAAAAGGCCAGCAACTTCAAATGGAAAGCCACAACCAACAATTCTTCAAGACTATATCAAACACAAGACTCTTACCACTGCAACAACTACCACAGAAATCTTAGAGGAACATGCAGTAGCAGGAGCAAGCCAATTAAGCCTCTTGTTATCTCAACCTTCTGAGTCTGTGACTGCTGAAAATAATACATTATCACCACCATTCACAGAGGAATCGCATGATGATGAGTTACTCTTCATGCAAGAACTTTTCAAGGAGAATAACTTTCAGACCCAGCAACATGCTAATGTTGTTGAAAGTGTTAATCACTCTAAGAATGAGGGTTATAATTGCCAAACTAATAATAATGGTAAACAGCTTCTTACTGTGACCGAGTCTGGGTTTGTTTATTATAATCCAAACCTAAACAACAACATGGTCTATGATGAAAGTCTCATTTCTAGAAAGACTCCGACCAATTACCTTGATCTCTATGTCTCACACTTGCTGAATGGTGCTGCAAGTTCTTCTTCATCACTTTGCTATGATTATGGGAATAAAAATCTTAACACTGATTTGAAGCTTGGGGATGATCAAGACTTCTCAGATGGAAAGAGAGAGATGGATTTGATAGAGATGGTTTGCTCCAACAGTTATAATTTCTACTAG 1401 0.3933 MKSMGGRIIVSGGLDAIPIHGSGNMKATIPSMFRSGPPLTAIDRFLWGQQQQPHNIVARNTNASVFDNEFYKVACSGGGSSYRFVWPNYTQEGSFYDEIIANEEALNWENHFNTTCQNENANVLRKNVKMVRRKPKKGSSSMSLIKGQWTVEEDRKLLKLVKQHGVTKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVETHAKVGNRWAEIAKTIPGRTENAIKNHWNATKRRQNSRRKNKRPATSNGKPQPTILQDYIKHKTLTTATTTTEILEEHAVAGASQLSLLLSQPSESVTAENNTLSPPFTEESHDDELLFMQELFKENNFQTQQHANVVESVNHSKNEGYNCQTNNNGKQLLTVTESGFVYYNPNLNNNMVYDESLISRKTPTNYLDLYVSHLLNGAASSSSSLCYDYGNKNLNTDLKLGDDQDFSDGKREMDLIEMVCSNSYNFY 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0934 466 PANTHER MYB DOMAIN PROTEIN 64-RELATED 131 383 - -
Lal5g0934 466 ProSiteProfiles Myb-like domain profile. 141 192 IPR001005 -
Lal5g0934 466 Gene3D - 199 265 - -
Lal5g0934 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 247 IPR017930 -
Lal5g0934 466 MobiDBLite consensus disorder prediction 242 256 - -
Lal5g0934 466 Gene3D - 145 197 - -
Lal5g0934 466 Pfam Myb-like DNA-binding domain 149 206 - -
Lal5g0934 466 SMART sant 197 245 IPR001005 -
Lal5g0934 466 SMART sant 145 194 IPR001005 -
Lal5g0934 466 MobiDBLite consensus disorder prediction 231 267 - -
Lal5g0934 466 PANTHER MYB PROTEIN-RELATED 131 383 - -
Lal5g0934 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 196 IPR017930 -
Lal5g0934 466 CDD SANT 200 243 IPR001005 -
Lal5g0934 466 SUPERFAMILY Homeodomain-like 143 239 IPR009057 -
Lal5g0934 466 ProSiteProfiles Myb-like domain profile. 193 243 IPR001005 -
Lal5g0934 466 CDD SANT 149 192 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0934 Lal-Chr5 11249906 11252646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0934 35 458 MYB Transcription Factor Family AT5G58850 38.479 1.97e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal5g0934 Myb_DNA-bind_6 5.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0934 K09422 - gmx:100786295 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0934 5 11249906 11252646 Lal5g0934 5 11249906 11252646 ECH